KEGG   Sphingobium sp. YBL2: TZ53_12515
Entry
TZ53_12515        CDS       T03855                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
syb  Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:syb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:syb03400]
    TZ53_12515
Enzymes [BR:syb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     TZ53_12515
    5.6.2.6  RNA 3'-5' helicase
     TZ53_12515
DNA repair and recombination proteins [BR:syb03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    TZ53_12515
SSDB
Motif
Pfam: DEAD Helicase_C Cas3-like_C_2
Other DBs
NCBI-ProteinID: AJR24430
LinkDB
Position
complement(2730430..2732646)
AA seq 738 aa
MSTFASDAPSYDRLHPEIRRWVRDEGWTGLREIQDTAIRSILGSSSDVIIMAGTASGKTE
AAFLPLLTEAAEMTGGGLRLLYVSPLKALINDQFRRLEPLCERLGLPITRWHGDAPQGPK
TRLLKAPAGVALITPESIEALLLRRPADATKLFRGVHGIVVDELHAFLQGPRGLHLASLL
RRVDRIASGRPRRVGLSATLGDADAACRWMNAVSPQSVTVLRAPKSGPGVRLQIRGYEEP
PEAVGIDEIAENGAHDALSQIADHIFANLRGSNNLAFAASRRTVEALADRLRERSERDKV
PEEFFPHHGSLSKELRETLETRLKAGDQPTTAVATTTLELGIDLGSVQSVAQVGAPRSLS
GLKQRLGRSGRRGSPAVLRIYVREDHLDPDSDPLDKLRLETVRAVACVRLLQENWVEPST
EDPSLATVALHQTLSLIASEGGVRAPAAHKLLFGRDSYLAFAPSDYADLLRGAGPQGFEL
LEQSPDGILMLGRAGEELVQARDFYAVFKTDEEWRLVSSGRTLGTVPLTNVLGIGSLVGF
AGRRWRVEAVDDRAKVLEVVPHRSGKLPRFDRPANEQLHDHVTATMLEVLSDHEIPAYLD
AAGKKFLLQGRTAFRELGLHRRALIPAARDTHVITWRGTAINSVLSIVLMSAGLEVAVHD
VGVTAFDVTPKQLAAILQQAGDCPPMEDLSDFVLGLRTAKLDDFIEESVLRRLWAARNEK
HRDTVSSILTELRTAMTF
NT seq 2217 nt   +upstreamnt  +downstreamnt
ttgtcgaccttcgcatctgacgccccgtcctatgatcggcttcatcctgaaatccgccgc
tgggtgcgcgatgagggatggaccggcctgcgtgagatacaggacacggcgatccgctcg
atcctgggatccagcagcgacgtaatcatcatggccggcacagcctcgggcaagaccgag
gcagcgttcctgccgctgctcaccgaggcagcggagatgacaggtggtggccttcgcctc
ctatacgtcagtccgctcaaggcgctgatcaacgaccagttcaggcgtctcgaacctctg
tgcgaacgccttggtctaccaatcacccgttggcatggcgacgcgcctcagggtcctaag
acgagactgctcaaggcgccagcgggcgtcgcgctgatcacccctgaatcgatcgaggcc
ctcctgctgcgccgccccgccgatgccactaagctgttcagaggcgtgcatgggatcgtc
gtggacgagcttcacgcattcctccaaggcccgcgcgggctgcacttggcctctcttctc
cgtcgcgtcgacaggatcgcgtccggacgcccgcgacgggtcggcctctccgccacgcta
ggcgatgccgacgcggcctgccgctggatgaacgcggtcagcccccagagcgtaacagta
ttgcgggcgccgaagagcggcccaggtgtcaggctgcagattcgaggatacgaggagcct
cccgaggcagtcgggatcgatgagatcgccgaaaacggtgcgcacgatgcgctcagccaa
atcgccgaccatatcttcgccaacctgcgcggatcgaacaacctcgccttcgctgcctct
cgccggacggtcgaggcactcgcggaccgcctccgcgagcggtcggagcgagacaaggtg
ccggaggaattcttcccgcatcacggcagcctctccaaggaactccgcgagacgctggag
acgcggctcaaggctggcgaccagcctaccaccgcagtcgcgacgacaacgctcgagctc
ggcatcgatctgggcagcgtccagtcggtcgcccaagtgggtgcgcccagatcgctttcc
ggtctgaagcagcgcctcggtcggagcggccgtcgcggtagcccggcggtcctccgcatc
tatgtccgcgaagaccatctcgatccggattccgatccgctggacaagctacgcctcgaa
acggtgagggccgtcgcctgcgtccgacttctgcaggagaattgggtcgagccctctaca
gaagacccctcgcttgccacggtggctctgcatcagaccctctcgctcatagcatccgag
ggcggcgtccgtgcgcccgcggcgcacaagctcctattcggtcgggacagctacctagcc
ttcgcgccgtccgactacgccgatttgctccgcggggctggtcctcagggtttcgaactt
ctcgaacaatcgccagatggcatcctcatgctcggtcgtgcgggggaggaactggtccag
gcgcgcgacttctatgccgtcttcaagacggacgaggaatggcgccttgtctcgagcggc
cgtaccctcgggaccgttccgctcaccaatgtcctcgggataggatcactcgtaggcttc
gcaggccgtagatggcgcgtagaggcggtcgatgaccgcgccaaggtgctcgaagttgtt
ccccatcgatccgggaagctgcctcgcttcgatcggcccgcgaacgagcaactgcacgac
cacgtcaccgcgacgatgctggaggtgctgtctgaccacgagatccccgcatatctcgat
gcagccggaaagaagttcctcctgcaggggcgcaccgcgtttcgcgaactcggcctccat
cggcgcgcactcatccccgcggcgcgagacacccacgtcatcacctggcgtggcacggct
ataaattcggtgctgtcgatcgtcctcatgagcgctggcctagaggttgcggtccacgac
gtgggcgtgactgcgttcgatgtgacaccgaagcaactcgctgccattctccagcaggcg
ggcgattgcccgccgatggaagatctctcggactttgtccttgggctgagaaccgcgaaa
ctcgacgattttatagaggagagtgtgcttcgacgcctttgggctgcccggaatgaaaag
catcgagacactgtgagctcaatcctaaccgaattgcggaccgcgatgacattttaa

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