Sphingobium sp. YBL2: TZ53_12840
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Entry
TZ53_12840 CDS
T03855
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TZ53_12840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syb03019
]
TZ53_12840
03009 Ribosome biogenesis [BR:
syb03009
]
TZ53_12840
Enzymes [BR:
syb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TZ53_12840
Messenger RNA biogenesis [BR:
syb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TZ53_12840
Ribosome biogenesis [BR:
syb03009
]
Prokaryotic type
rRNA processing factors
TZ53_12840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AJR24479
LinkDB
All DBs
Position
complement(2804897..2807593)
Genome browser
AA seq
898 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREERAHAEEEAALRAEVEDDEDVAADGGLE
VVEATHHHDDEDHGEETAENGNGGDNGRGRGRRGKGDDAADELRRKRMALRRRYKIQDVI
KRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKS
IIAEMNLPSTMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLKSDAPALIHNDSDL
IKRAIRDIYNKDIEEVIVEGEYGYKAAKDFMKLLMPSHARRVKQYADAVSLFQRASVEDQ
LAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIARQL
RLRDMAGLVVIDFIDMEMNSNIRKVEKAMKEALKDDRARIQVGRISGFGLMEMSRQRLRT
GVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGSLITLRASQEAAFYVLNN
KRRELDEIEQRYGVRIAILPDGEVEGARMSVEASGPRPERVVDYTPIAEEDDDLDVIEEL
DEEEIEEVDAAQEERAERGEDRGDDREGGGRRRRRRRRRRGGQRDEHRAESETQGEAGED
ADSAEEEAEIEGETEAVLAEAAAEAEGEGRRRGRRGRRGGRRRREAGEEAVSEGSVASEE
AVEAEVVQEPVAEATPEAPAEEEAPKTRRRPRARKAKESAAPAAEAVEAVAVEAPVETPV
EAVPEAAAAEEAPAKPKRTRRKKADPVAEEAAAAEAAPAAPAAEEAPAKPKRTRRKKADP
VVEEAVAAETASSVETPVEAVPSDEAAETLIVNGEAEAADEGDDGAPRRGWWQRTFGQ
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtatgctgatcgatgcgcgccaccgggaagaaacccgggtcgcggtcgtc
aaaggtaaccggatcgaggagttcgacttcgaatcggccgagcacaagcagctcaagggc
aatatctacctcgccaaggtcactcgcgtagaaccgtcgttgcaggcggccttcgtcgat
tatggcggcaatcggcacggtttcctggctttcagcgaaatccaccccgactattatcag
atcccccgcgaggaccgcgaagcgctgctgcgcgaggaacgcgcccatgcggaggaagag
gccgcgctgcgcgccgaggtcgaggatgacgaggatgtcgccgccgacggcgggctggaa
gtcgtcgaggccacccatcatcatgacgatgaggatcatggcgaggaaacggccgagaac
ggcaatggcggcgataacggcaggggccgcggccgtcgcggcaagggcgacgatgccgcc
gacgaactgcgccgcaagcgcatggcgctgcgccgccgctacaagattcaggacgtcatc
aagcgccgccaggtgctgctggtgcaggtcgtcaaggaggagcgcggcaacaagggtgcg
gcgctgaccacttacctgtcgcttgccggccgttattgcgtgctgatgcccaacaccagc
catggcgggggcatttcgcgcaagatttcgaacgccgccgaccgcaagcggctgaagtcg
atcatcgcggagatgaacctgccctccaccatgggctgcatcgtccgcaccgcgggcctc
cagcgcaccaagccggagatcaagcgcgacttcgactatctggcgcgcctgtgggacgaa
atccgcgagaagacgctgaagtcggacgcgcccgcgctgatccacaatgacagcgacctc
atcaagcgggcgatccgcgacatctacaacaaggatattgaagaggtcatcgtcgagggc
gaatatggctataaggcggccaaggacttcatgaagctgctgatgcccagccatgcgcgc
cgggtgaagcaatatgccgacgcggtgtcgctgttccagcgcgccagcgtcgaggaccag
ctcgcggcgatgtacaatcccgtcgttcagctcaagtccggcggctatctggtcatcaat
ccgaccgaggcgctggtttcgatcgacatcaactcgggccggtcgacccgcgagcatggc
atcgagcagaccgctgtcgccaccaatctggaagcggcgcgggagattgcacgtcagttg
cgcctgcgcgacatggcgggcctggtcgtcatcgacttcatcgacatggagatgaactcc
aacatccgcaaggtcgagaaggcgatgaaggaggcgctgaaggacgatcgcgcccgtatc
caggtcggccggatctccggcttcggcctcatggaaatgagccgccagcggctgcgcacc
ggcgtgctggaagcatcgacccgccagtgcccgcattgcgaaggcacggggctggtccgc
accgcttcgtcggccggcctcagcgcgctgcgcatgctggaagaggaggcggcgcgcggt
cgcggcagcctgatcacgctgcgggcgagccaggaagcggccttctacgtgctcaacaac
aagcgccgggagctggacgagatcgagcagcgctatggcgtgcgcatcgcgatcctgccc
gatggcgaggtcgaaggcgcgcgcatgtcggtcgaggccagcgggccgcgtccggagcgg
gtggtggactatactccgatcgcggaagaggatgacgatctcgacgtcatcgaggaactg
gacgaggaagagatcgaggaagtcgacgccgcgcaggaggaacgcgccgagcggggcgag
gatcgcggtgatgatcgggaaggaggcggccgtcgccgtcgccgccgtcgtcgccgtcgc
ggcggtcagcgcgacgagcatcgcgccgagtcggagacccaaggcgaggctggcgaggac
gccgacagcgctgaagaggaagccgagatcgagggcgagaccgaggctgttctggccgaa
gccgccgccgaagcggagggcgaaggccgtcgccgtggccgtcggggccgccggggcgga
cgccgccgccgcgaagccggcgaggaagcggtgagcgaaggctcggttgcaagcgaggaa
gccgtcgaggccgaagtcgttcaggagcccgtggcggaagcaacgcccgaagcccctgcc
gaggaagaagcgcccaagacccgccgccgcccccgtgcacgcaaggcgaaggaaagcgcc
gcgcctgccgccgaagcggtggaagccgttgcggtcgaagctcctgtggaaacgcccgtc
gaagccgtgccggaagccgccgccgccgaagaggcgccggccaagcccaagcgcacgcgc
cgcaagaaggccgatccggtagcggaggaagccgctgctgccgaggctgcaccggcagcg
cccgccgccgaagaggcgccggccaagcccaagcgcacgcgtcgcaagaaggccgatccg
gtggtcgaggaagccgttgccgccgagaccgcgtcatccgttgaaacgcccgtcgaggcc
gttccatccgatgaggctgcggagacgctcatcgtgaacggagaagccgaagcggcagac
gaaggtgacgatggcgcgccgcgccgcggctggtggcagcgcaccttcggccagtaa
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