Sphingobium sp. YBL2: TZ53_13485
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Entry
TZ53_13485 CDS
T03855
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TZ53_13485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_13485
Enzymes [BR:
syb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TZ53_13485
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TZ53_13485
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TZ53_13485
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AJR24584
LinkDB
All DBs
Position
2916388..2917200
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTVAGLRSVLQGSLLTRVEPRRADLRFPIPVDLRQRLTGATVTGLSRRAKYG
LIDTDRGDTLIFHLGMSGRWRIDPAEIGPHDHLLIGTGGGRLLSLNDPRRFGSLDLVRSE
AWEAHNPFTRMGPEPLGPDFTADALAAALKGKATSIKAALLDQRIVAGLGNIYVCEALHM
AGIAPTREAGRIGRARLALLVDAIREVLTAAIAAGGSTLRDYARPDGELGYFSKQWRVYG
REGEACHCGTPVRRRVDGGRSTFFCPKCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacttcccgaagtcgaaaccaccgtcgcgggcctgcgatcggtcctgcagggc
tcgctcctgacgcgggtcgagccgcgccgcgccgacctgcgctttccgatacccgtcgac
ctgcgccagcggctgaccggcgccaccgtcaccggcctgtcgcgccgcgccaaatacggc
ctgatcgacaccgaccgcggcgacacgctgatcttccacctcggcatgtcgggccgctgg
cgaatcgatccggcggagatcgggccgcatgaccatctgttgatcgggaccgggggaggg
cggcttctgtcgctcaacgacccgcgccgcttcggctcgctcgacctggtccgcagcgag
gcgtgggaggcccataaccccttcacccgcatgggacccgagccgctggggccggatttc
acggccgatgcgctggccgccgcgctgaagggcaaggcgacgtcgatcaaggccgcgctg
ctcgaccagcgcatcgtagccgggctgggcaatatctatgtctgcgaggcgctccacatg
gccggcatcgccccgacgcgcgaagcgggccggatcggccgcgcccgcctcgccctgctg
gtcgacgcgattcgggaggtgctgaccgccgccatcgccgcgggcggatcgacgctgcgc
gactatgcccggcccgacggcgaactgggttatttctccaagcaatggcgggtctatggc
cgggagggggaagcctgccattgcggcacgcccgtcaggcgccgcgtggatgggggcaga
tcgacctttttctgcccgaaatgccagaaatag
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