Sphingobium sp. YBL2: TZ53_13655
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Entry
TZ53_13655 CDS
T03855
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TZ53_13655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syb03021
]
TZ53_13655
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_13655
Enzymes [BR:
syb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TZ53_13655
Transcription machinery [BR:
syb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TZ53_13655
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TZ53_13655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Vsr
Motif
Other DBs
NCBI-ProteinID:
AJR24614
UniProt:
A0A0C5X5Z3
LinkDB
All DBs
Position
complement(2952982..2957238)
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPIQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQALLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALYA
KAVTLHSKIISRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKTAMVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPNTGRMAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTVVEEDCGTDKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSVIVPIGTLLDEALVAQIEAIGTQAVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEAMSDGTIELRDMPT
ITDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDTVKKGDRFAEWDPFTM
PVITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEHRGSARTKEDLRPRLTLLDDQS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGGEPVEYLIPKSKVIDVQEGDYVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEITVSGDTT
LLVGEQVDREEMEEINAKLQPGFQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAEEHAAELRQGPEAAIGDDPLAVVQGEDFTTEDME
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgacgaacttcgccaatccgatccagaagccggaaaccttcgaccagatc
cagatcggccttgcctctccggagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaaccatcaactaccgcacgttcaagccggaacgtgacggcctgttctgcgcccgc
atcttcggtccgatcaaggactatgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaaatgcggtgtcgaagtcacggtgtcgaaggtccgccgcgaa
cggatgggccatatcgaactggccgcgcccgtcgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcgtcctgtat
ttcgaaagctacatcgtcaccgagccgggcctgaccccgctggagaagtatcagctcctg
accgaggacgaactgctcgacgcgcaggacgaatatggcgaagacgccttctccgccggc
atcggcgcggaagcggtcaagcagatgctgatggacctcgaccttgagggcgagaagcag
gcgctgctggacgaactggccgtcaccaagtcggaactgaagcccaagaagatcatcaag
cggctgaaggtcgtcgagtccttcctggaatcgggcaaccggccggagtggatgatcctg
gacgtcgtgccggtcatcccgccggaactgcgcccgcttgttcccctggacggcggccgc
ttcgcgacctcggacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatggaactgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaggccgtcgacgccctgttcgacaatggccgccgcggccgcgtcatcaccggcgcg
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtgaccggcccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctctccatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacattctcgacgaagtcattcgcgagcac
ccggtcatgctgaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgaaccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggcgaccagatggccgtccacgtgccgctgtcgctggaagcccagcttgaa
gcccgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgtcccctcgcaggacatggtgctgggcatctattatctgtcgatggaacgcgaaggc
gagccgggcgaaggcatgctgctggccgacatgcaggaggtccatcaggccctctatgcc
aaggccgtcaccctgcactcgaagatcatcagccgcgtgccgcagaccgacgaagccggc
aatcagtatatgaagcgcttcgagaccacgccgggccgcatgctgctgggcgaatgcctg
cccaagtcgcacaaggtgcccttcgacgtcgtcaaccgccttctcaccaagaaggaaatc
ggggacgtcatcgaccaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgccatcatggcgctgggcttccgccacgcgttccaggcgggcatcagcttcggcaag
gacgacatggtgatcccggattcgaagaccgcgatggtcgacgaaaccaaggcgctggtg
gccgactatgagcagcaatatcaggacggtctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtcgcgaacgccatgatggacgaaatc
cgcgcccagcccaaggacccgaatacgggccgcatggcgccgatcaactccatctacatg
atggcgcattccggtgcccgtggttcgcaggcgcagatgaagcagcttgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggtctcaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtcagc
caggactgcaccgtcgtcgaggaggattgcggcaccgacaaggcgctggagatgaaggcc
atcgtgcagggcggctcggtcatcgcttcgctcggcgaacgaattctgggccgcaccacg
gcgcaggacatcgtcgacagcaaggacggttcggtcatcgtgccgatcggcacgctgctc
gacgaagcgctggtcgcgcagatcgaggccatcggcacgcaggccgtgaagatccgcagc
ccgctgatctgcgaaagcaagatgggcgtctgtggcaagtgctacggccgtgacctcgcc
cgtggtacgccggtcaatatcggtgaagcggtcggcgtcatcgcggcgcagtccatcggc
gagccgggcacgcagcttaccatgcggaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccatgtcggacggcacgatcgagctgcgcgacatgccgacc
atcaccgacaagaatggccgccgcctgtcgctcgcccgcaatggcgagatcgcgatcatc
gacagcgagggccgcgagcgcgaaacgcaccgcctgccttacggcgccaccatcctgttc
gcggatggcgacaccgtgaagaagggcgatcgcttcgctgagtgggaccccttcaccatg
ccggtgatcaccgaaaagccgggcatcgtgaagtatcaggacctgatcgacggcaagacg
ctgaccgaacagaccgacgaagcgaccggcatcgcgcagcgcgtcgtgaccgagcatcgt
gggtccgcccgcaccaaggaagaccttcgtccgcgcctcaccctgctcgacgaccagtcg
ggcgaagccgcacgctatatgctggcggtgggggcgaccctgtcggtggacgacggcgcg
caggtgcaggccggtgacgtgctggcgcgtgtcagccgcgaagcggccaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgaactgttcgaagcccgcaagcccaaggacaat
gccatcattgccaaggtgtcgggccgcgtccagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatccggaggatggcggcgagccggtcgaatacctcatccccaagagc
aaggtgatcgacgttcaggaaggcgactatgtgaagcgcggcgacaacctgatcggtggt
tcgcccgacccgcacgatattctcgaagtgctcggcatcgagccgctggccgaatatctg
gttgccgaaatccaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatc
gaaacgatcgttcgtcagatgctgcaaaaggtcgagatcaccgtgtccggcgacaccacg
ctgctggtgggcgagcaggtcgaccgcgaggagatggaggagatcaacgccaagctccag
cccggcttccagccggcagagggcaagccggtgctgctcggcatcaccaaggcgtcgctc
cagacgcgcagcttcatctcggcggcctccttccaggaaaccacccgcgtcctcacggaa
gcggcggtccagggcaagaaggacacgctggtcgggctcaaggagaatgtcatcgtcggc
cgcctgatcccggcgggcaccggcgccggcatgaaccgcatgcgcgtcgccgcctcgtcg
cgtgacgcggcgatgcgggcggcgctgcgggcctccagccaggtcgacctgatcgcgccc
aagacggctgccgaagagcatgccgccgaactgcgccagggtccggaagccgccattggc
gacgatccgctggccgtcgtccagggtgaggatttcaccaccgaggacatggaataa
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