Sphingobium sp. YBL2: TZ53_16000
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Entry
TZ53_16000 CDS
T03855
Symbol
groEL
Name
(GenBank) molecular chaperone GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TZ53_16000 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syb03019
]
TZ53_16000 (groEL)
03110 Chaperones and folding catalysts [BR:
syb03110
]
TZ53_16000 (groEL)
03029 Mitochondrial biogenesis [BR:
syb03029
]
TZ53_16000 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
syb04147
]
TZ53_16000 (groEL)
Enzymes [BR:
syb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
TZ53_16000 (groEL)
Messenger RNA biogenesis [BR:
syb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
TZ53_16000 (groEL)
Chaperones and folding catalysts [BR:
syb03110
]
Heat shock proteins
HSP60 / Chaperonin
TZ53_16000 (groEL)
Mitochondrial biogenesis [BR:
syb03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
TZ53_16000 (groEL)
Exosome [BR:
syb04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TZ53_16000 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
TZ53_16000 (groEL)
Exosomal proteins of breast cancer cells
TZ53_16000 (groEL)
Exosomal proteins of colorectal cancer cells
TZ53_16000 (groEL)
Exosomal proteins of bladder cancer cells
TZ53_16000 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Mu_Gam-Sipho_Gp157-TOTE
Pho88
Motif
Other DBs
NCBI-ProteinID:
AJR25006
LinkDB
All DBs
Position
3453633..3455279
Genome browser
AA seq
548 aa
AA seq
DB search
MAAKDVKFSRDARERILRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEI
ELKDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGI
DLAVAKVVEDIKARSKPVAGSNEVAQVGIISANGDREVGEKIAEAMDRVGKEGVITVEEA
KGLDFELDVVEGMQFDRGYLSPYFITNPEKMQVELADPYILIHEKKLSNLQSILPILEAV
VQSGRPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAVLTKGEV
ISEDLGIKLENVTLGMLGTAKRVTIDKDNTTIVDGAGDGEAIKGRTEQIRAQIETTTSDY
DREKLQERLAKLAGGVAVIKVGGATEVEVKERKDRVDDALHATRAAVEEGIVPGGGTALL
YATKALKDLKGANDDQTRGIDIIRKAIEAPLRQIASNAGVDGAVVAGNLLRENDETKGFN
AATDTYENLVAAGVIDPTKVVRAALQDAASVAGLLITTEATIAELPSDDKAPMGMPGGGM
GGMGGMDF
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgaaggacgtaaagttttcgcgtgacgctcgtgagcgcatcctgcgcggcgtc
gacatcctggccgacgcggtcaaggtgaccctgggccccaagggccgcaacgtcgtcatc
gacaagagcttcggcgcgccccgcatcaccaaggacggtgtttcggtcgccaaggaaatc
gaactgaaggacaagttcgagaatatgggcgcccagatggtgcgcgaagtcgcttcgaag
accaacgacatcgccggtgacggcaccaccaccgcgaccgtcctcgcccaggcgatcgtt
cgcgaaggcatgaagtcggtggccgccggcatgaacccgatggacctgaagcgcggcatc
gacctcgccgtcgccaaggtggtcgaggacatcaaggcccgctcgaagccggttgccggt
tcgaacgaagtcgcccaggtcggcatcatctccgccaatggcgaccgtgaagtcggcgaa
aagatcgccgaagccatggaccgcgtcggcaaggaaggcgtgatcaccgtcgaggaagcc
aagggcctcgatttcgaactggacgtcgtcgaaggcatgcagttcgaccgcggctacctc
tcgccctacttcatcaccaacccggaaaagatgcaggtcgaactggctgacccctacatc
ctgatccacgagaagaagctgtcgaacctgcagtcgatcctgccgatcctcgaagccgtg
gttcagtcgggccgtccgctcctcatcatcgcggaagacatcgaaggcgaagcgctggcg
accttggtcgtcaacaagctgcgcggcggcctgaaggtcgctgcggtcaaggctccgggc
ttcggcgaccgccgcaaggccatgctggaagacatcgccgtcctgaccaagggcgaagtc
atctccgaagacctcggcatcaagcttgagaacgtgaccctcggcatgctcggcaccgcc
aagcgcgtcaccatcgacaaggacaacaccaccatcgtcgatggcgccggcgacggcgaa
gcgatcaagggccgcaccgagcagatccgcgctcagatcgagaccaccacgtccgactat
gaccgcgaaaagctgcaggagcgtctggcgaagctggctggcggcgtggccgtcatcaag
gtcggcggcgcgaccgaagtcgaggtgaaggagcgcaaggaccgcgtcgacgacgcgctg
cacgcgacccgcgcagccgttgaagaaggcatcgtccccggcggcggcacggccctgctg
tacgcgaccaaggccctcaaggacctcaagggcgccaatgacgaccagacccgcggcatc
gacatcatccgcaaggccatcgaagcgccgctgcgccagatcgccagcaatgcgggcgtc
gacggcgccgtcgtcgccggcaacctgctgcgcgaaaatgacgagaccaagggcttcaac
gccgcgaccgacacttatgagaacctcgtcgccgctggcgtgatcgacccgaccaaggtc
gtccgcgccgcgctgcaggacgccgcttcggtggccggcctgctgatcacgaccgaggcg
accattgccgaactgccctccgacgacaaggcgccgatgggcatgcccggcggcggcatg
ggcggcatgggcggcatggacttctaa
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