Sphingobium sp. YBL2: TZ53_16900
Help
Entry
TZ53_16900 CDS
T03855
Name
(GenBank) cell wall degradation protein
KO
K21470
L,D-transpeptidase YcbB
Organism
syb
Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
syb01002
]
TZ53_16900
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
syb01011
]
TZ53_16900
Peptidases and inhibitors [BR:
syb01002
]
Cysteine peptidases
Family C82
TZ53_16900
Peptidoglycan biosynthesis and degradation proteins [BR:
syb01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
TZ53_16900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AJR25155
UniProt:
A0A0C5XKV0
LinkDB
All DBs
Position
3665328..3666824
Genome browser
AA seq
498 aa
AA seq
DB search
MLPALLLTAWPGHAIVQPGAVADSQRTSVAAEIRSSVGGKLRDFYAPRGYWPLWIEKGRV
GPQADALIALIEGADADGLKPRDYEPRELKSLMKEADANGDPRLLARADIALSKAFAALV
SDMRKPSRKVKVRYLDPEVEPKDEEPKEILRAAAVAPSFVDYVRSSGWMSPFYVKLRDAR
ATFARRWGGLPQVSVPTDGKLRPGMKAGAVALRRRLGLEGGTAYDKALVARVKAYQGDHG
LKPDGVAGAATIAALNRGDDYYDRLIALNLERTRLLPGPQVRHVVVDAASARLWYFSKGV
QDGTMKVVVGAKESQTPMMAGMVRYATLNPYWNVPSDLVERKLAPRMLNGASLTKLRYEA
LSDWSANAQKLEPAAIDWRAVADGRTELRVRQLPGGDNAMGKVKFMFPNDLGIYLHDTPS
RDLLAKPARQFSNGCVRLEDAQRLGRWFFGKPLKPDSDKPEQHVPLPQPVPVYLTYLTAV
PTAGGVQFMPDVYGRDGI
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ctgcttcccgcgcttctgctgacggcctggcccggacacgccattgtgcagcccggcgcg
gttgcggactcccagcgcaccagcgtggcggcggaaatccgctcgtccgtgggcggcaag
ctgagggatttctacgccccgcgcggctattggccgctctggatcgaaaagggcagggtc
gggccgcaagccgatgccctgatcgcattgatcgagggggccgatgcggatgggttgaaa
cccagggattatgaaccgcgcgaactcaagtccctgatgaaggaggccgatgcgaacggc
gatccccggctgctggcgcgggcggacatcgccttgtccaaggccttcgccgcgctggtg
agcgacatgcgcaaaccctcgcgcaaggtgaaggtgcgctatctcgatccggaggtggag
ccgaaggatgaggaaccgaaggagattctgcgcgccgccgcagtcgcgccgtcctttgtc
gactatgtgcgttcgtccggctggatgagccccttttacgtgaagctgcgcgacgcccgg
gcgactttcgcaaggcgttggggcggactgccgcaagtgtcggtgccgaccgatgggaag
ctgcgccccggcatgaaggctggcgccgtggcgcttcgccgccgcctggggttggagggc
ggaaccgcctatgacaaggcgcttgtcgcaagggtgaaggcgtatcagggcgatcatggc
ctgaagccggacggtgtcgcgggcgctgcgaccatcgccgcgctgaaccggggcgatgat
tattatgaccggctgatcgcgctcaatctggaacgaacgcggctgctgcccggtccgcag
gtgcggcatgtggtggtcgatgcggcctccgcccgcctctggtatttcagcaagggcgtg
caggacggcacgatgaaggtggtcgtcggcgcgaaggaaagccagacgccgatgatggcg
ggcatggtgcgctatgcgacgctcaatccctattggaacgtgccgtccgatctggtcgag
cggaaactcgcgccgcgaatgctgaacggcgcctcgctgacgaagctgcgctatgaagcg
ctttccgactggagcgccaatgcgcaaaagctggagccggccgcgatcgactggcgcgcg
gtggccgacgggcgcaccgaattgcgcgtgcgccagcttcccggcggcgacaatgccatg
gggaaggtcaagttcatgtttcccaacgatcttggcatctacctgcacgacacgccatcg
cgcgaccttctggcaaagccggcgcggcagttcagcaatggctgcgtgcggctggaggat
gcgcaaaggctgggccgctggttcttcggcaagccgctgaagcccgacagcgacaagccg
gaacagcatgtgcctctgccccagcccgtgccggtctatctgacctatctgaccgccgtg
cccaccgcgggcggggtgcagttcatgcccgacgtctatggacgcgacggcatctag
DBGET
integrated database retrieval system