Sphingobium sp. YBL2: TZ53_17245
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Entry
TZ53_17245 CDS
T03855
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03030
DNA replication
syb03430
Mismatch repair
syb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TZ53_17245
03430 Mismatch repair
TZ53_17245
03440 Homologous recombination
TZ53_17245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syb03032
]
TZ53_17245
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_17245
Enzymes [BR:
syb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TZ53_17245
DNA replication proteins [BR:
syb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TZ53_17245
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TZ53_17245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DNA_pol3_delta2
DUF3646
DNAX_ATPase_lid
AAA
AAA_5
AAA_22
RuvB_N
AAA_30
AAA_14
AAA_assoc_2
AAA_16
AAA_19
PIF1
DUF815
AAA_24
AAA_18
Glyco_tranf_2_5
AAA_2
Cdc6_lid
Adeno_E1B_55K_N
Motif
Other DBs
NCBI-ProteinID:
AJR25215
LinkDB
All DBs
Position
3742503..3744113
Genome browser
AA seq
536 aa
AA seq
DB search
MSDSPQPYRVLARKYRPRNFRELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTA
RLIAKALNCIGPDGQGGPTIDPCGVCEPCMAIAEGRHIDVVEMDAASHTGVDDVREIIEA
VRYAAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVLSRC
QRFDLRRIPAELLAAHFAHVVEAESVAAEPDALALIAQAAEGSARDGLSILDQAIAHAEM
GEGAPLVTAMQVRDMLGLSDRGATRRLLGLLLEGDTGALLGAVRDQYALGVEPLSLMRGL
LELVHAVALVKAGRDIANPGQSAEEREALADWALQLGFAPLHRLWQLLLKGHEEVASAAL
PIESCEMALLRVMHAATMPDPGEIARLLREGAPAAAAPGQAPAAIPSGSPAAKLPASFEE
LIEAFWQRGKGQLAQEMHDCIGLVRYAAPELDYAPTSSLSSDFLARLNPALREVTGTAWR
VSAVDGPAAPTLLEQEMRKAADARAEIMETPVVKAALAAFPDAELGDELEQWSAER
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattccccccagccctatcgcgtgctcgcgcgcaaatatcgcccgcgcaatttc
cgggaactgatcgggcaggacgcgatggtccagacgctgggcaatgcgatccgccgggga
cgcctggcccatgccttcctgatgaccggcgtgcgcggcgtggggaaaacctccaccgcg
cgcctcatcgccaaggcgctgaactgcatcggcccggacgggcagggcggtcccaccatc
gatccctgcggcgtctgcgaaccctgcatggccattgccgagggacgccatatcgacgtg
gtcgaaatggacgccgccagccataccggcgtcgacgatgtgcgggaaatcatagaggcg
gtgcgctacgccgccgtttcggcccgctacaagatctatatcatcgacgaagttcacatg
ctgtccaagaacgccttcaacgcgcttctgaagacgctggaggagccgccggcgcatgtg
aaattcctcttcgccacgacggaagtgaacaaggtgccggtgacggtgctgtcgcgctgc
cagcgcttcgacctgcgccgcatccccgccgaactgctcgccgcccatttcgcccatgtt
gtggaggcggaatcggtcgcggccgaacccgatgcgctggcgctgatcgcccaggcggcc
gagggttcggcgcgcgacggcctgtccatcttggaccaggccatagcgcatgcggaaatg
ggcgaaggcgccccgctcgtcaccgccatgcaggttcgcgacatgctgggcctctccgac
aggggcgccacacgccgcctgctgggcctgctgctcgaaggcgacaccggcgcgctgctt
ggcgcggtgcgcgatcaatatgcgcttggcgtggagccgctctcgctgatgcgtggcctg
ctggaactggtccatgcggtggcgctagtgaaggcgggccgcgacatcgccaatcccggc
cagtcggcggaggagcgcgaggctctggcggattgggccttgcaactcggcttcgcgccg
ctgcaccggctatggcaattgctgctgaagggccatgaagaggttgccagcgcggcattg
ccgatcgaaagctgcgaaatggcgctgctgcgcgtgatgcacgccgcgaccatgcccgac
cccggcgagatcgcccgcctgctgcgcgaaggcgcgcctgcggccgccgctccggggcag
gcgcccgccgccataccctccggatcacctgccgcgaaacttccggccagcttcgaagag
ctgatcgaagccttctggcagcgcgggaaggggcaacttgcgcaggaaatgcatgattgc
atcggccttgtccgctatgccgcgccggagctggactatgccccgacgtcttccctgtcg
tccgatttccttgcccgcctgaacccggcgctgcgcgaggtgaccggcacggcctggcgc
gtcagcgccgtcgacggtcctgccgcgccgaccctgctggaacaggaaatgcgcaaggcg
gcggatgcccgtgcggaaatcatggaaaccccggtggtcaaggcggcgttggctgctttc
cccgatgccgagcttggcgacgagctcgaacaatggagtgcagagcgatga
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