Sphingobium sp. YBL2: TZ53_18405
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Entry
TZ53_18405 CDS
T03855
Name
(GenBank) 3-hydroxyacyl-CoA dehydrogenase
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb00071
Fatty acid degradation
syb00280
Valine, leucine and isoleucine degradation
syb00310
Lysine degradation
syb00362
Benzoate degradation
syb00380
Tryptophan metabolism
syb00410
beta-Alanine metabolism
syb00640
Propanoate metabolism
syb00650
Butanoate metabolism
syb00907
Pinene, camphor and geraniol degradation
syb00930
Caprolactam degradation
syb01100
Metabolic pathways
syb01110
Biosynthesis of secondary metabolites
syb01120
Microbial metabolism in diverse environments
syb01200
Carbon metabolism
syb01212
Fatty acid metabolism
Module
syb_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
TZ53_18405
00650 Butanoate metabolism
TZ53_18405
09103 Lipid metabolism
00071 Fatty acid degradation
TZ53_18405
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
TZ53_18405
00310 Lysine degradation
TZ53_18405
00380 Tryptophan metabolism
TZ53_18405
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
TZ53_18405
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
TZ53_18405
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
TZ53_18405
00930 Caprolactam degradation
TZ53_18405
Enzymes [BR:
syb01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
TZ53_18405
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
TZ53_18405
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
TZ53_18405
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
ECH_2
3HCDH
DAO
NAD_binding_2
Sacchrp_dh_NADP
2-Hacid_dh_C
DUF2680
F420_oxidored
Shikimate_DH
NAD_Gly3P_dh_N
UDPG_MGDP_dh_N
Motif
Other DBs
NCBI-ProteinID:
AJR25410
UniProt:
A0A0C5XLK6
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All DBs
Position
3990161..3992329
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AA seq
722 aa
AA seq
DB search
MKTMRLEKAEDGFAILTLDAEGSMNVVNDAFIADMEAAAKQIAADESIKGVILTSAKKTF
MAGADLKQLVNGFGTLTPQEAYAFSKRATDMHRAIEQSGKPWVAAINGLALGGGFELALA
CHRRILVDDAKAQVGLPEVNVGLLPGSGGTVRLGIIAGMKIALDLLLSGRSVGPQEALKL
KIVDEVVPADKLIDAAKAWLATGPDPVKPWDVKGWTPPQKKGLTVPEDSAAYMMYTGGLA
KVGYNQPAPAAILNSVFHGLQLPFDKALAVEGKYFARLLTDPVARNIIRTTFISKQAAEK
GARRPEGFPKFEAKKVGVLGAGMMGAGIAFVSANANIDVVLIDRDTATAQKGKDYSAKVL
GKLVEKGKLTQDKADAVLARITPTDDFALLDGCDMVVEAVFEDTAIKAETTKKAEAVLPA
QAIFASNTSTLPISQLAQASRSPDQFIGLHFFSPVDRMGLVEVIMGKQTSKATLAKSLDF
IAQLRKTPIVVNDSRGFYTSRVFQMLIHEGAAMLAEGVPPAVIENAAKAVGMPVGPLALL
DELTLDLPLKIVDQAIAEEGDKYTPPAGTAVMRRMKDEIGRSSRKAGGAFYDYPEGGKKH
LWKGLTDHFPVKQGWDVEELKKRYLYAQAMETARCLEENVLETPQDADLGAIYGWGFPAW
TGGTISYIDTIGIKKFVEESDRLAQLYGPRFLPSAWLRDKAAKGEDFYTPASETTVKEPM
PA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaagactatgcgactggaaaaggccgaggacggctttgcgatcctgaccctcgatgcc
gaaggctcgatgaacgtcgtcaacgatgctttcatcgctgacatggaagcggcggcgaag
cagattgccgcggacgaaagcatcaagggcgtcatcctgacgtccgccaagaagacgttc
atggccggtgcggacctcaagcagctcgtgaatgggttcggcacgctgacgccgcaggaa
gcctatgccttttcgaagcgcgccaccgacatgcaccgcgccatcgaacaatcgggcaag
ccttgggtggcggcgatcaacggcctggcgctgggcggcggtttcgagctggcgctggcc
tgccaccggcgcatcctggtggatgatgccaaggcgcaggtgggtttgcccgaagtcaat
gtcggtctgctgcccggatcgggcggcacggtgcggttgggcattatcgcgggcatgaag
atcgcgctcgacctgctgctgtcgggccgctcggtggggccgcaggaagcgctcaagctc
aagatcgtggacgaggtcgtcccggcggacaagctgatcgacgcggcgaaggcgtggctt
gcgaccgggcctgatccggtcaagccctgggacgtcaagggttggacgccgccgcagaag
aagggcctgaccgttcctgaggattcggccgcctacatgatgtatacgggcggtctcgcc
aaggtgggttataatcaacccgcgccggccgcgatcctgaactcggtgttccacggcttg
cagttgcccttcgacaaggcgctcgcggtcgagggtaaatatttcgccaggctgctgacc
gatccggttgcgcgcaacatcatccgtaccaccttcatttcgaagcaggcggccgaaaaa
ggcgcgcgtcgtcccgaaggcttcccgaagttcgaagcgaagaaagtgggcgtgctgggc
gcgggcatgatgggcgcgggcatcgcgttcgtctccgccaatgcaaatatcgacgtcgtg
ctgatcgaccgcgacacagcgaccgcgcagaagggcaaggactattcggccaaggtgctg
ggcaagctggtcgaaaagggcaagctgacgcaggacaaggcggacgccgtcctcgcccgc
atcaccccgaccgacgacttcgcgctgctcgatggctgcgacatggtggtcgaagcggtg
ttcgaggatacggcgatcaaggccgaaaccacgaagaaggccgaagcggtgctgccggca
caagccattttcgcgtccaacacctcgaccctgccgatctcgcagctcgcgcaggcatcg
cggagcccggatcagttcatcggcctgcacttcttctcgccggtcgaccgtatgggcctg
gtcgaggtgatcatgggcaagcagaccagcaaggcaacgctggccaagagcctcgacttc
atcgcgcagctgcgcaagacgccgatcgtcgtcaacgacagccgtggcttctacaccagc
cgcgtgttccagatgctgatccacgaaggcgcggcgatgctggcggagggcgttcccccg
gcggtgatcgaaaacgccgccaaggctgtcggcatgccggtcgggccgctggcgctgctg
gacgagctgacgctcgacctgccgctcaagatcgtcgaccaggcgatcgcggaggaaggc
gacaaatatacgccgcctgccggcactgccgtcatgcgtcggatgaaggacgagatcggc
cgatccagccgcaaggcgggcggcgccttctacgactatcccgaaggcggcaagaagcat
ctgtggaagggcctgaccgatcatttcccggtcaagcagggctgggatgtcgaagaactg
aagaagcgctatctctacgcgcaggcgatggaaaccgcccgttgtttggaggaaaatgtg
ctggaaaccccgcaggacgccgacctgggcgcgatctacggctggggtttcccggcatgg
accggcgggacgatcagctacattgacacgatcggcattaagaagttcgttgaggaatcc
gatcggctcgcgcagctttatggcccgcgcttcctgccgtccgcatggctgcgcgacaag
gcggcaaagggtgaggatttctacacgcctgcgagcgaaaccacggtcaaggagcccatg
ccggcatga
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