Sphingobium sp. YBL2: TZ53_18730
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Entry
TZ53_18730 CDS
T03855
Name
(GenBank) DNA helicase UvrD
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
syb
Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_18730
Enzymes [BR:
syb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TZ53_18730
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
TZ53_18730
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
DUF5721
DUF2800
Motif
Other DBs
NCBI-ProteinID:
AJR25463
LinkDB
All DBs
Position
4064705..4068148
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AA seq
1147 aa
AA seq
DB search
MAGTMARKHNALQPLAGAQAQAAAPDAHVWLSASAGTGKTHVLTARVFRLLLQGVQPENI
LCLTFTKAGAAEMADRVHDRLAAWVLMDEADLFHDLDALGEESGPEARDRARRLFAEVLE
STGGGLRIQTIHGFCQQLLTAFPLEAGLPPGFRPLDQREQATLARQTLADMVVVAQEQGD
EALMEALQALSLRLGEGGAENFLLRCAARLDALDALPEDIAPWLLRELDLPEGDIDAHIA
ERCADELFDMRTLIWIAQANADWGTGRALERCDRIARWRALDPAGRAAALADLHAVWAKA
DGEPISTARGWAPSVDGYGDAIARMHECCSGLLGLRTRAAYAALLARALHAGRVYARAYA
EAKRLAGAVDFDDLIANTAQLLSQPGIADWIRYKLDQQIDHILVDEAQDTNVSQWQIVGA
LAAEFFAGEGAKGDRVRTIFTVGDFKQAIFGFQGTSPEAFRAAQIVFQRHAEDASHIFHD
LSLQHSFRSTPAVLDVVDRTIATLRAERFGLEPGEVRHISANRFPGEVLLWKPVIAGLSD
DAEGEEDWAADQERVLAQSIARQIRQWIDDGLMLESRGRPVTAGDIMILVRRRSELARLI
VARLYEEKVAVAGIDRLRLNAPLAVRDLLAALRFAVQPEDDLNLAALLVSPLIGWTQDEL
MTRLIGRRLGLWQHLTATLDDALLHPLRQLLAQADFTTPYRYLEAILSGPMDGRRRLIER
LGSEAADPIEELLNAALAFENDDHPSLQRFIDWFDRGEVEIVRDAAAQGDSLRLLTVHGA
KGLQAPIVILADACLDPDAGNRADSLEWNGLPIIAPRKGERQGAIGQVAEEASAVERAEH
WRLLYVALTRAEERLVVAGSLGPRARGEVKPESWYAAVEAALISLDAEWEADPLWGARRS
WRGSEILPARPLETAVAENRTAHDEPDWLRRRAPAEARPPRPLAPSAAVEDDVPYPPPTP
AMRDAAERGRWLHRLFERLADVPPDARRSRADNWLAQQGLGDPARRHDVMEQALRVIEDP
RFAPLFGPDALAEAPIAAVVGEAVIAGTVDRLRIGDDVVQLVDFKTGRISPLVVEEVPLA
HVRQMAAYAAALQVIFPGRRIEAGLLYTSAPRLITLPPELLERHKPGFPPAQENLPLPTV
EADASPS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggccgggacgatggctagaaagcacaacgctctgcaaccgctggcgggcgcgcaggcg
caggccgccgcgcccgatgcgcatgtgtggctgtccgcatcggcgggcacgggcaagacc
catgtgctgaccgcccgcgtcttccgcctgctgcttcagggggtgcagccggaaaatatc
ctctgcctcaccttcaccaaggcgggtgcggcggaaatggcggatcgcgtgcacgatcga
ctcgccgcctgggtgctgatggacgaggccgaccttttccacgatctggatgcgctgggc
gaggagtccggaccggaagcccgcgaccgcgcccgccgcctttttgccgaggtgctggaa
tcaaccggcggcgggctgcgcatccagacgatccacggcttctgccagcagttgctgacg
gccttccctttggaggccggcctgccccccggtttccgtccgctcgaccagcgcgagcag
gcgacgctggcgcggcagacgctggccgacatggtggtggtcgcgcaggagcagggggac
gaggccctgatggaggcgttgcaggcgctgagcctgcgcctgggggagggcggggccgag
aatttcctgctgcgctgcgcggcccggctggacgcgctggacgccttgccggaggacatc
gcgccctggctgctgcgggaactggacctgccagaaggcgacatcgacgcgcatattgcc
gaacgatgcgcggacgagctgttcgatatgcgcacgctcatctggatcgcgcaggccaat
gcggactggggcactggacgggcgctggaacgctgcgacaggatcgcgcgctggcgggct
ctcgatccagcggggcgggccgctgcgctggccgatctccacgcggtctgggcaaaggcg
gacggcgagccgatctcgaccgcccggggctgggcgccttcggtggacggctatggcgat
gcgattgcgcggatgcacgaatgctgttccgggctgctgggccttcggacccgcgcagcc
tatgccgccctgctcgccagggctttgcatgccggccgcgtctatgcgcgggcctatgcg
gaagccaagcgccttgcaggagccgtggatttcgacgacctgatcgccaatacggcgcaa
cttctgtcccagccgggcattgccgactggattcgctacaagctcgaccagcaaatcgac
catatattggtggacgaggcgcaggataccaatgtcagccaatggcagatcgtcggcgcg
ctggcggcggagttcttcgcgggcgagggcgccaagggcgacagggtgcgcaccatcttc
acggtgggcgacttcaagcaggcgatcttcggatttcaggggacgagccccgaagccttc
cgcgccgcgcagatcgtcttccaacgccatgcggaggacgcaagccatatattccacgac
ctctcgcttcagcacagcttccgctcgacgccggccgtgctggatgtggtcgaccgcacc
atagcgaccctgcgtgccgaacgcttcggcctggagccgggcgaagtccggcacatcagc
gccaaccgctttccgggagaagtgctgctctggaaacccgtcatcgccggcctgtccgac
gatgcggagggggaggaggattgggccgccgatcaggagcgggtgctggcccagagcatc
gcgcgccagatcaggcagtggatcgatgacgggctgatgctggagagccggggccgcccc
gtgacggcgggcgacatcatgatcctggtccgccgccggtccgaactggcgcggctgatc
gtcgcgcgcctctatgaggagaaggtggctgtggcgggcatcgaccgcctgcgcctgaac
gcgccgctcgccgtgcgcgacctgctcgcggcactgcgtttcgccgtgcagccggaggat
gacctgaacctggcagcgctgctggtgtcgccgctgatcggctggacgcaggatgaactg
atgacccgcctcatcggccgccgcttggggttgtggcagcatctgacagcgacgttggac
gacgcactgctgcaccccttgcggcagttgctggcgcaggcggacttcaccaccccctat
cgttatctggaggcgatattgtccggcccgatggatggccgccgccgcctgatcgagcgt
ctggggtcggaagcggccgatccgatagaggaattgctgaacgccgcgctcgccttcgag
aatgacgatcatccctcgctccagcgcttcatcgactggttcgacaggggcgaggtggag
atcgtgcgcgatgccgccgcgcagggcgactcgctccgcctgctgacggtgcacggggcg
aagggactgcaggcgcccatcgtcatcctggccgacgcatgcctcgatccggacgcaggc
aatcgcgccgattcgctggagtggaacggcttgccgatcatcgcgccgcgcaagggggag
aggcagggggcaatcggccaggtggccgaggaggccagcgccgtcgagcgcgccgaacat
tggcgcctgctctatgtcgccctcacccgggcggaggaaaggctggtcgtcgccggctcg
ctcggtccccgcgccaggggcgaggtcaagcccgaaagctggtatgccgccgttgaagcg
gcgctcatttcgctggacgcggaatgggaggccgatccgctctggggcgcgcggcggagc
tggcgcggaagcgaaatcctgcccgccagacccctggagacggctgttgcggaaaaccgg
acggcgcatgacgaaccggattggctccgccgccgcgcccctgccgaggcgcgccctccg
cgtcctctggcgccctccgctgcggtggaggacgatgtgccctatccgccgccgaccccc
gcgatgcgggacgcggccgaacgcgggcgctggctgcaccggctgttcgaaaggctggcc
gatgtgccgccggatgcccgccgctcccgcgccgacaactggctggcgcaacagggcctt
ggcgatccggcgcggcggcatgacgtcatggaacaggcattgcgagtgatcgaagacccg
cgatttgccccgctgttcggccccgatgcgctggccgaagcgcccatcgccgccgtggtg
ggcgaggcggtgatcgccggcacggtcgaccggctgcgcatcggtgacgatgtggtgcaa
ctggttgatttcaagaccggccgcatatcgccgctggtggtggaggaggtgccattggcc
catgtgcggcagatggccgcctatgcagccgcgctccaggtgatctttccgggccgcagg
atagaggccggcctgctctacacatccgcgccgaggctgatcaccctgccgccggaactg
ttggagcggcacaagcccggctttccgcccgcgcaggagaatttgccgcttccgaccgtt
gaggcggatgcgtcgccatcctaa
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