Sphingobium sp. YBL2: TZ53_19085
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Entry
TZ53_19085 CDS
T03855
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
syb
Sphingobium sp. YBL2
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syb03032
]
TZ53_19085
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_19085
Enzymes [BR:
syb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TZ53_19085
DNA replication proteins [BR:
syb03032
]
Prokaryotic type
DNA Topoisomerases
TZ53_19085
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TZ53_19085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Poly_export
Motif
Other DBs
NCBI-ProteinID:
AJR25525
UniProt:
A0A0C5XLT6
LinkDB
All DBs
Position
complement(4143910..4146462)
Genome browser
AA seq
850 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPPKDGSVDPDNGFAMSWENYGDKGK
QLKAIADEAKKATRLILATDPDREGEAISWHVQEVLRAKKALPQKVDRVTFNAITKQAVT
EAMAQPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVDRE
REIESFVPQEYWSVAAEMEQGGQGFVARLVRWRGEKIERLTIGREGDAMAAKADVEAGRF
TVEKVETKPVSRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAIAERYDGGYLPEKPRQYQTKAKNAQEAHEAIRPTEFSRDKVGSGDHAR
LYDLIFKRALASQMASARLERTTVDLVDATGQHGLRATGQVVIFPGFLALYEEGRDDAED
DDSRLLPRLGVGDAPAKKRVTAEQHFTQPPPRYSEASLVKKLEELGIGRPSTYASTLQVL
KDRDYVRIEKNRFFAEESGRLVTAFLERFFERYVSYDFTAGLEEELDDISGGRAQWQAVL
EAFWRDFKPKTAEVMEQKPSDITAELDKFLEPMLFPPKADGSNPRACPMCGDGQLSLRGG
RFGAFIACSNYPECKYTRKFGQPGGDKDGEDKGPEVLGQHPETGQDIVRKSGRFGPYIEM
GEGKEAKRGSIPKDLPDGELTLDWAVKLLSLPREIGLHPETGKPIVANIGRFGPYLLHDG
KYGRLSSTAEIFEVGMNSAVAKLADAANKGGRGASSREPLKVLGKHPRTEAEIKLMAGRY
GPYVTDGTTNATLPKTIEQDALTLEEAAQLIDARAAAAPAKKGKKAPAKKGAAKKPAAKK
ASAKKKVAAE
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgtcatcgttgaatcgccggccaaggcgaagaccatcgaaaaatatctgggc
ggcgatttccatgtgctggccagctatgggcatatccgcgacctgccgcccaaggacggg
tcggtggaccccgacaacggctttgccatgagttgggaaaattatggcgacaagggcaag
cagctcaaggccatagccgacgaagccaagaaggcgacccggctgatcctggcgaccgac
cccgatcgcgagggggaggcgataagctggcatgtgcaggaggtgctgcgggcgaagaag
gcgctgccgcagaaggtggaccgcgtgaccttcaacgcgatcaccaagcaggcggtgacc
gaggcgatggcccagccgcgcgcgctggacgaggatctgatcgacgcctatcgggcgcgg
cgggcgctggattatctggtgggcttcaccctgtcgccggtgctgtggcgcaagctgccc
ggcgccaagtcggcggggcgggtgcagtccgtggcgttgcggctggtcgtggaccgggag
cgcgagatcgaaagcttcgtgccgcaggaatattggtcggtcgcggccgagatggagcag
ggcggacaggggttcgtcgcgcggctggtgcgctggcgcggcgagaagatcgagcggctg
accatcggcagggaaggcgacgccatggccgcgaaggcggacgtggaggccgggcgcttc
accgtcgagaaggtcgagaccaagccggtttcgcgcaatcctccgccgccattcacgacc
tcgacgcttcagcaggaggcggcgcgcaagctcggcttctccgccagccatacgatgcgg
atcgcgcagcagctttatgaggatggcgcgatcacctatatgcggaccgacggcgtgcag
atggacggcagcgccatctccgccgcgcgaaaggcgatcgcggagcgctatgacggcggc
tatctgcccgaaaagccgcgccagtaccagaccaaggccaagaatgcgcaggaagcgcat
gaggccattcgtccgaccgagttttcgcgcgacaaggtggggtcgggcgaccatgcgcgg
ctgtacgacctgatcttcaagcgggcgctggcgagccagatggcttcggcgcggctggag
cggacgaccgtcgatctggtcgatgcgaccgggcagcatgggctgcgcgccacgggacag
gtggtgatctttccggggttcctggcgctctatgaggaagggcgcgacgatgcggaagac
gatgattcgaggctgttgccgcgcttgggcgtgggcgacgctcccgccaagaagagagtg
acggcggagcagcatttcacccagccgccgccgcgctattcggaagcgtcgctggtcaag
aagctggaggaactggggatcgggcggccttccacctatgcctcgactttgcaggtgctg
aaggaccgcgactatgtgcggatcgagaagaaccgcttcttcgcggaggagagcgggcgg
ctggtgacggcctttctggagcgtttcttcgagcggtatgtgtcctacgacttcacggcg
gggctggaggaggagctggacgatatttccggcgggcgggcccagtggcaggcggtgctg
gaagcgttctggcgcgacttcaagcccaagaccgccgaggtgatggagcagaagccttcc
gacatcacggccgagctggacaaattcctggagccgatgctgttcccgcccaaggcggac
gggtccaatccgcgtgcctgcccgatgtgcggcgatgggcaattgtcgctgcgcggcggg
cggttcggcgcgttcatcgcctgctccaactatccggagtgcaaatatacgcgcaagttc
gggcagccgggcggtgacaaggatggcgaggacaagggaccggaggtgctgggccagcat
cccgagaccgggcaggacatcgtccggaaatccgggcggttcgggccctatatcgagatg
ggcgagggcaaggaggcgaagcgcggctccattcccaaggatctgcccgatggcgagttg
acgctggactgggcggtgaagctgctgagcctgccgcgcgagatcgggctgcatcctgaa
acggggaagcccatcgtggcgaatattgggcggttcgggccctatctgctgcatgacggc
aaatatgggcggctgtcctccaccgcggagattttcgaggtggggatgaacagcgccgtg
gccaagctggccgatgcggcgaacaagggcgggcgtggcgcttcgtcgcgggagccgctg
aaggtgctgggcaagcatccgcgcactgaggccgagatcaagctgatggcggggcgctat
ggtccctatgtgaccgacggcacgaccaatgcgacgctgcccaagaccatcgagcaggat
gccctgacgctggaggaggctgcgcaactgatcgatgcgcgggctgcggcggcgcctgcg
aagaaggggaagaaggcgccggcgaaaaagggtgcggcgaagaagcctgccgcgaagaag
gcgtctgccaagaagaaggtggcggcggagtaa
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