Sphingobium sp. YBL2: TZ53_19210
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Entry
TZ53_19210 CDS
T03855
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb03030
DNA replication
syb03430
Mismatch repair
syb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TZ53_19210
03430 Mismatch repair
TZ53_19210
03440 Homologous recombination
TZ53_19210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syb03032
]
TZ53_19210
03400 DNA repair and recombination proteins [BR:
syb03400
]
TZ53_19210
Enzymes [BR:
syb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TZ53_19210
DNA replication proteins [BR:
syb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TZ53_19210
DNA repair and recombination proteins [BR:
syb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TZ53_19210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
COE1_HLH
Scaffold
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AJR25544
UniProt:
A0A0C5X8J4
LinkDB
All DBs
Position
complement(4172685..4176221)
Genome browser
AA seq
1178 aa
AA seq
DB search
MPHAGFVPLRVFSSFTMLEGAIDPKKIAKQARALGFPAAAITDRNGLYGSMAFSDACKGE
GVQPIIGAMIGISRPDRPANAAPVHDWIALYAQDAVGYDNLCALVSMAHLDRPVEEVPHI
SLNMLEGRTDGLIALTAGGEGALARLFAEDQPAAALAYASRLEALFPGRLYIEICRRFDP
IEGKAEPELLDLAYARDLPLVATNPTCFAEPHFHEAHDVMLCIADSAYVETPDRRTSSPD
AWMKPAAEMRRLFEDLPEALANTLVVAQRCAIAAPKRKPILPSLAGDIEGEAKMLREQAT
AGLEARLAKAGITDEEARKPYFDRLRFEADIIIQMGFPGYFLIVADFIKWAKDHDIPVGP
GRGSGAGSVVAWALTITDLDPLQLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQ
KYGTDHVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERSLNGV
AEFRAEYDNDAQVRRLIDYAMKLEGFPRHSSTHAAGVVIGDRPLSQLVPLYRDPRSDMPV
TQFDMKYVEGAGLVKFDFLGLKTLSVLQKAVQLLAGRGVEVDLNSLGWDDPAVYELLQRG
DTVGVFQLESEGMRKTLAAVRPTNFGDIIALVSLYRPGPMDNIPMFGRRKNGQEEIEYPH
ILLKPILEETYGIFVYQEQVMQAAQILAGYSLGDADLLRRAMGKKIKAEMDAQRARFVEG
CANSGIAAGKANDLFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPAEFYAASMAFD
IHLTDKLTVFVDDMRRMGLSCLAPDINRSLADFSVEPVQYEGDDPRLGFAVRYALGGLKG
VGEKAMEQLVAEREVGGPFKSLDDFADRIEPRLLNRRQLESLAAAGAFDGVHADRAGVHA
AAETILSVASSAAEARESGQGGLFGDVETPHADVRIPPHQTWSTADRMAQEKDAFGFYFS
AHPVDRYRHLAEARGAKSYGAICAEPVAEGGRATGVMAAMVEDVRWRETKRGARYAAATF
SDSSGQFQASCFDEDACKAIEDMAREGDCALLMVELDRLPGEETPRVTVRGVEPFRQLAN
SSRMELVVDVSDAAAIGTLAQLLARAKGGRSEVFLRAPVGGGKAARLFLGDDYLIGADQV
DSIATIAGLRIGSFERMEAKADGYRARNRRSGLRLVAG
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcctcatgccggtttcgtcccccttcgcgtcttttcatccttcaccatgctggagggg
gcgatcgaccccaagaagatcgcgaagcaggccagggctctgggctttcccgccgcggcc
atcaccgaccgtaacggcctgtatggctccatggccttttccgacgcctgcaagggggag
ggggtgcagccgatcatcggcgcgatgatcggcatttcgcgccccgaccgcccggccaat
gcggcgcccgtgcacgactggatcgccctctatgcgcaggatgcggtcggctatgacaat
ctctgtgcgctggtatccatggcgcatctcgaccggcccgtcgaagaggtgccgcatatc
agcctaaacatgctggaggggcggaccgatggcctgatcgccttgaccgccggaggggaa
ggcgcgctggcgcggctcttcgccgaggatcagcctgctgctgcgctggcctatgccagt
cggctggaagcgctgtttcccggaaggctctatatcgaaatctgccgccgtttcgacccc
atcgaagggaaggcggaaccggaactgctcgaccttgcctatgcccgcgacctgcctctg
gtggcgaccaacccgacctgctttgccgagccgcatttccacgaagcgcatgacgtgatg
ctctgcattgccgacagcgcctatgtcgagacgcccgaccgtcgcaccagttcgccggac
gcctggatgaaaccggcggcggagatgaggcggctgttcgaggatttgcccgaagcgctc
gccaatacgctggtggtcgcccagcgctgcgccattgccgcccccaagcgcaagcccatc
ctccccagcctggccggcgacatagagggcgaggcgaagatgctgcgcgagcaggcgacg
gcagggctggaagcccggctggccaaggccggcatcaccgacgaggaagcgcgaaagccc
tatttcgaccggctgcggttcgaagccgacatcatcatccagatgggatttccgggctac
ttcctgatcgtggccgacttcatcaaatgggcgaaggatcatgacattccggtggggccg
ggacgtggttcgggcgctggatcggtcgtcgcctgggcgctgacgatcaccgatctggac
ccgctgcaactgggattgctgttcgagcgcttcctgaacccggaacgcgtctccatgccg
gacttcgacatcgacttctgtgaaacccggcgaggcgaggtgatccgctacgtccagcag
aaatatggcacggaccatgtcgcgcagatcatcaccttcggaaagctgaaggcgcgcgcc
gttctgaaggacacgggccgcgtcctgcagatgagctatgggcaggtcgaccgcctggcc
aagctggtgcccaaccatccgaccgatccctggacgctggaacgctcgctgaacggcgtg
gcggagttcagggcggaatatgacaatgacgcgcaggtcaggcgactgatcgactatgcg
atgaagctggagggctttccgcgccacagctccacccatgcggcgggcgtggtgatcggc
gacaggccgctgtcgcaactggtgccgctctatcgcgatccgcgctccgacatgccggtg
acgcagttcgacatgaaatatgtcgagggcgcggggctggtgaagttcgacttccttggc
ctcaagacgctgtccgtcttgcagaaggcggtgcaactgcttgcgggccggggggtggag
gtcgacctcaattcgctcggctgggacgatccggcggtctatgaactgctccagcggggc
gatacggtcggcgtgttccagttggaatcggagggcatgcgcaagacgctggccgccgtg
cgtccaaccaatttcggggacatcatcgcgctggtgtcgctctaccgccctgggccgatg
gataacatcccgatgttcggccgtcgcaagaacggtcaggaagagattgaatatccacat
atattgctgaaaccgatcctggaagagacctatggcatcttcgtctatcaggaacaggtg
atgcaggccgcgcagatattggcgggctattcgctgggcgatgccgaccttctgcgccgc
gccatgggcaagaagatcaaggcggagatggatgcgcaacgcgcccgcttcgtcgagggg
tgcgcgaacagcggcatcgcggcgggcaaggcgaacgatctgttcgacttgatcgacaag
ttcgcgggctatggcttcaacaagtcgcacgccgccgcctatgctctgcttgcctatcag
accgcctggctgaaggcgcattatccggcggaattctatgccgcgtccatggccttcgac
atccacctgacggacaagctgaccgtgttcgtggacgacatgcggcgcatggggctgagc
tgcctggcgccggacatcaaccgcagcctggcggatttttcggtcgagccggtccaatat
gaaggcgacgacccgcgcctgggctttgccgtgcgctatgcgctgggcgggctgaaaggc
gtgggcgagaaggcgatggaacagcttgtggccgagcgggaggttggcggcccgttcaag
tcgctggacgattttgccgaccggatcgagccgcgtctgctcaaccggcggcaattggaa
agcctggcggcggctggcgccttcgacggcgtgcatgccgaccgggccggcgtccatgca
gcggcggaaacgatcctcagcgtcgcctccagcgctgcggaggcaagggaaagcggtcag
ggcggtctgttcggagatgtcgaaacgccgcatgcggatgtccgcatcccgccgcaccag
acctggtcgacggcggaccgcatggcgcaggaaaaggatgccttcggcttctatttctcc
gcgcatccggtggaccgctaccgccatctggcagaggcgcgcggcgcgaaaagctatggc
gcgatttgcgccgaaccggtggcggagggcggacgtgccaccggcgtgatggcggccatg
gttgaggatgtgcgctggcgtgaaaccaagcgcggtgcgcgctatgccgccgcaacattc
tccgacagcagcggtcagtttcaggcaagctgcttcgatgaggatgcctgcaaggctatc
gaggatatggcgcgcgaaggcgattgcgcgttgctgatggttgaactggaccgcttgccg
ggcgaagaaacgccgcgggtgacggtccgcggggtggaacctttccgccaattggccaat
agttcccgcatggaactggtggtcgatgtgagcgatgcagccgcaatcgggacgttggcg
cagcttctggcgcgcgcgaagggaggacggagcgaagtcttcctgcgtgcgcccgtgggg
ggaggcaaggcggcgcggctgttcctgggcgacgattatctgatcggtgcggaccaggtc
gacagcatcgcgacgattgccggcctgcgcattgggtcgttcgaacggatggaagccaaa
gcggacggctatcgcgcacgcaatcggcgttcgggcttgcgcttggtggctggttga
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