Sphingobium sp. YBL2: TZ53_19490
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Entry
TZ53_19490 CDS
T03855
Name
(GenBank) penicillin-binding protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
syb
Sphingobium sp. YBL2
Pathway
syb00550
Peptidoglycan biosynthesis
syb01100
Metabolic pathways
syb01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
syb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
TZ53_19490
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
TZ53_19490
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
syb01011
]
TZ53_19490
Enzymes [BR:
syb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
TZ53_19490
Peptidoglycan biosynthesis and degradation proteins [BR:
syb01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
TZ53_19490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
EABR
Motif
Other DBs
NCBI-ProteinID:
AJR25594
LinkDB
All DBs
Position
4240949..4243018
Genome browser
AA seq
689 aa
AA seq
DB search
MKLPLLKKKTVTEASLSFTFTRRAMVVGGLQGAIGALLVGRMGWISVAENEKYNLLSESN
RVNLTLIPPRRGWIIDRNGRPLANNRTDFRVDLIPERATDAENTIRSLAHLLALSDDEVD
RIKEELDKSAGFRPVQVAEKLTYDQFAAVSVRLPDLPGVAPSQGFSRNYPAGATVGHLLG
YVGAASAKDYEERKDPLLITPGFKVGKDGLERSFDKELTGKPGAKRVEVTARGKIVRELT
TRPDTPGNAIKLTIDAGLQEYAGRRLATQSGSVVVIDCHNGDVLAMASMPSFDPNSFSDG
ISHLEWDMLSKDDHVPLRNKTLQGLYPPGSTVKPMVALALLEAGVSPMETVNCAGAIRVG
NTLFHCHKRRGHGGLNMRGAIAQSCDIYFYQMAQRIGMDRIASMARRVGMGQKFALPFPS
QSFGTVPDPAWKLKKYNQKWQVYDTVNATIGQGYMLINPLQMAVMAARLATGRQLMPNFI
FGAQRPTPASVGVNEEHLVTIRDAMSAVVNGGGTGGAARIPLPGVMMAGKTGTAQVRRIT
MAERGGGVRSNASLPFKLRDHALFQGFAPFDNPRYAIACIIEHGGHVNRIEDAPMIAADT
MTFLFDQAKAIEKLETIEKDWGGPPAERLARQMAAYRLAKAIEKGEAPLPEAANAMNASA
GNGATATAAPPPAPAAEADDAPPPADSAP
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcccctgctcaagaagaagaccgtcaccgaagcctccctgtccttcaccttc
acgcgccgggcgatggtggtggggggcctgcaaggggcgatcggggcgctgctggtcggg
cgcatgggctggatcagcgtcgccgagaatgagaaatataatctgctgtcggaaagcaat
cgcgtcaacctgacgctgattccgccgcggcgcgggtggatcatcgaccgcaacggacgg
ccgctggcgaacaatcgcacggacttccgcgtcgacctgatcccggagcgggcgacggac
gcggagaacaccatccgcagcctcgcccatctgctggcgctcagcgatgacgaagtggat
cggatcaaggaggaactggacaagtcggcaggtttccgcccggtgcaggtggcggaaaag
ttgacctacgatcagttcgcggcggtcagcgtccggctgcccgacctgccgggcgtggcc
ccgagccagggcttttcccgcaattatccggcaggtgcgaccgtcgggcacctgctcggc
tatgtcggcgcagcttcggccaaggactatgaggagcgcaaggacccgctgctgatcacg
cccggcttcaaggtcggcaaggatgggctggagcggtctttcgacaaggaactgacgggc
aagcccggcgcgaaacgggtggaggtgacggcgcggggcaagatcgtgcgggaactcacc
acccggcccgacacgccgggcaacgcgatcaagctgaccatcgacgcgggcctccaggaa
tatgccgggcggcggctggcgacgcagagcgggtcggtggtggtgatcgactgccataat
ggcgacgtgttggccatggcgtccatgcctagtttcgatccgaacagcttttccgatggc
atcagccatctggaatgggacatgctgtcgaaggacgaccatgtcccgttgcgcaacaag
acgttgcaggggctgtacccgccgggatcgacggtgaagccgatggtggcgctcgcgctg
ctggaggcgggagtttcacccatggagacggtgaactgcgcgggtgcgatccgggtcggc
aacacgctgttccactgccataaacggcggggccatggcgggctcaacatgcggggcgcc
atcgcccaaagctgcgacatctacttctaccagatggcgcagcggatcggcatggaccgg
atcgccagcatggcgcggcgcgtgggcatggggcagaaattcgcccttcccttccccagc
cagagtttcggcaccgttcccgatccggcgtggaagctcaagaaatacaaccagaaatgg
caggtctacgacacggtcaacgcgaccatcggccagggctatatgctcatcaacccgttg
cagatggctgtaatggcggcgcggctggcgacgggccggcagttgatgcccaacttcatc
ttcggcgcgcagcggcccacgcctgcgtccgtgggggtgaatgaggagcatctggtgacc
atccgcgacgcgatgagcgcggtggtgaacggcggcggcacgggcggcgcggcccgcatc
ccgctgcccggcgtgatgatggccggcaagaccggcacggcgcaggtccgccgtatcacc
atggccgaacgcgggggcggcgtgcgcagcaacgcatcgctgccgttcaagctgcgcgac
catgcgctgttccagggcttcgcgccgttcgacaatccccgctatgccattgcctgcatc
atcgagcatggcggccacgtcaaccgcatcgaggacgcgcccatgatcgcggcggacacc
atgactttcctgttcgaccaggcgaaggcgatcgagaagctggagaccatcgaaaaggac
tggggcggtccgccggccgaacggctggcgcggcagatggcggcctacaggctggcgaag
gcgatcgagaagggcgaggcgcctcttcccgaagcggccaatgcgatgaacgcatccgcc
ggcaatggcgcgaccgcgaccgccgccccgcctccggcaccggctgccgaagcggacgac
gccccgcccccggcggacagcgcgccatga
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