KEGG   Sphingobium sp. YBL2: TZ53_22300
Entry
TZ53_22300        CDS       T03855                                 
Name
(GenBank) conjugal transfer protein TrbB
  KO
K20527  type IV secretion system protein TrbB [EC:7.4.2.8]
Organism
syb  Sphingobium sp. YBL2
Pathway
syb02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:syb00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    TZ53_22300
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:syb02044]
    TZ53_22300
Enzymes [BR:syb01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     TZ53_22300
Secretion system [BR:syb02044]
 Type IV secretion system
  Trb secretion system protein
   TZ53_22300
SSDB
Motif
Pfam: T2SSE FtsK_SpoIIIE AAA_19 AAA_29 DUF87 nSTAND3 AAA_7 AAA_16 TrwB_AAD_bind cobW DEAD GTP_EFTU ABC_tran ResIII NACHT P-loop_TraG PduV-EutP ABC_ATPase TsaE AAA_23 Bac_DnaA AAA_22 AAA_30 PhoH ATPase RsgA_GTPase Pox_A32 Sigma54_activat ATP_bind_1 GpA_ATPase AAA_28 Septin UvrD-helicase Mg_chelatase Dynamin_N MMR_HSR1 ATP-synt_ab DUF815 ORC-CDC6-like IstB_IS21 AAA Zeta_toxin Roc nSTAND1 DLIC
Other DBs
NCBI-ProteinID: AJR26596
UniProt: A0A0C5XP45
LinkDB
Position
1pYBL2-1:complement(17638..18522)
AA seq 294 aa
MLDALADPKTVELILNADGKLWLERLGERMICIGKVAPSRAEAIIKAVAGYHNKEVTRAS
PVLEGEFPIDGSRFAGQMPPVVPAPTFAIRKRAVAIFTLEQYVEGGIMTAEQCSLIHEAI
RAHRNILVIGGTGSGKTTLVNAIINGMVDADPTERLVIIEDTGEIQCAAENYVQFHTSPQ
ITMTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAEAGLSRLQM
LISMHPDSPRPIEPLIGDAVHLIVHIARTPEGRRIESLLEVGGFVDGKYILRKL
NT seq 885 nt   +upstreamnt  +downstreamnt
atgttggatgcgcttgccgaccccaagaccgttgagctgatcctgaacgccgatggcaag
ctatggctggaacgccttggcgaacgcatgatctgcatcggtaaggtcgccccaagccgg
gccgaggcgatcatcaaggcggtcgctggctatcataacaaggaagtgacgcgggcctcc
ccggttctggaaggcgagtttcctatagatggctcgcgcttcgccggacagatgcccccg
gtcgtgcccgcgccgaccttcgccatccgaaaacgcgccgtggcgatctttaccctcgaa
caatatgtggagggcgggattatgacggcggagcaatgcagcctcatccatgaggctatc
cgcgcgcaccgcaacattctggtgattggcggcaccggcagcggcaaaacaacgctagtg
aatgccattatcaacgggatggtggacgcggacccgaccgaacggctcgtaatcattgaa
gataccggcgagattcaatgcgccgctgaaaactacgtccagttccacacgtccccgcaa
atcaccatgacggcgctgctcaaaaccacgctgcggatgcggcccgatcgtatcctagtg
ggcgaggtgcgcggcccggaagccctcgacctgctcatggcgtggaacaccggccacgag
ggcggagcggccacgctgcacgccaacaacgccgaagcgggccttagcaggctccaaatg
ctcatcagtatgcaccccgattcaccacggccgattgagccgctgattggtgatgcggtg
catttgatcgtccacatcgcgcgcacgccagagggtcgccgcattgaaagcctgctggaa
gtcgggggcttcgtggatgggaaatacattttgcgcaaactgtga

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