Synechococcus elongatus PCC6301: syc0139_c
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Entry
syc0139_c CDS
T00163
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
syc
Synechococcus elongatus PCC6301
Brite
KEGG Orthology (KO) [BR:
syc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syc03032
]
syc0139_c (topA)
03400 DNA repair and recombination proteins [BR:
syc03400
]
syc0139_c (topA)
Enzymes [BR:
syc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
syc0139_c (topA)
DNA replication proteins [BR:
syc03032
]
Prokaryotic type
DNA Topoisomerases
syc0139_c (topA)
DNA repair and recombination proteins [BR:
syc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
syc0139_c (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
BAD78329
UniProt:
A0A0H3K2F5
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Position
complement(149805..152456)
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AA seq
883 aa
AA seq
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MPKLVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQSASDIPTELKGEKWSNLGVDVE
NNFAPLYIVPKDKKKIVKTLKDALKDADELILATDEDREGESISWHLLQLLQPRVPTKRM
VFHEITQEAIQAALKNCRDVDQRLVHAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQ
SVAVRLLVQRERARRAFRQGSYWDLKAQLTVEAGQFEAKLWTLAGQRLATGNDFDESTGQ
IIAGRQVCLLDQQEAEALRDRLQTQPWQVKSLEEKPTTRKPAPPFTTSTLQQESNRKLRL
SARETMRVAQSLYERGFITYMRTDSVHLSQQAIEAARSCVEQMYGKNYLSPQPRQFTTKS
KNAQEAHEAIRPAGNTFRLPQETGLSGAEFALYDLIWKRTIASQMAEARQTMLSVLLEVD
NAEFRASGKRIDFPGFFRAYVEGSDDPDAALEDREILLPALKVGDRPTCQELAAIGHETQ
PPARYTEASLVKMLENEGIGRPSTYASIIGTIVDRGYAQLVSNTLTPTFTAFAVTALLEQ
HFPDLVDTSFSARMEQSLDDISNGEVDWLPYLSQFYRGDRGLEEQVKLRESEIDPAAART
VALEGLPAKVRIGRFGAYLEAEADGEPIKANLPKELTPADLDVQRVETLLRQKTEGPDQL
GTHPETDEPIYLLTGAYGPYVQLGAATEEKPKPKRASLPKGMSLETISLEQAVGLLSLPR
TLGEHPETGRRIQAGLGRFGPYVVCDLGGGEKDYRSLKADDDVLTIDLDRALELLAQPKK
SRGRGKEPIREVGLHPDDQAPIQIFEGPYGLYLKHGKVNASLPEDEKPETISLETAVAAL
AAKAGQAKAKGGRRSTGTPKSGETKARTTKTTKKTTTRRTTSR
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaactcgtcatcgtcgagtcgcccaccaaggcgcgcaccatccgcaactacctg
ccgaaggattaccgcgtcgaagcatcgatgggacatgtccgcgatcttccacagtcggca
agcgacattcccaccgaactgaaaggtgagaaatggagcaatcttggggtcgatgttgaa
aataacttcgcgccgctttatatcgtccccaaggataaaaaaaagattgtcaaaacattg
aaagatgcactgaaagatgccgatgaactgatcctggcaacggacgaagaccgcgaaggc
gaaagtattagctggcacttgttgcagcttttgcaacctcgggtgcccacgaagcgcatg
gtctttcacgaaatcacccaagaggcgattcaagcagccctgaaaaattgtcgggatgtc
gatcagcgcttggtccatgcccaagaaacccgccggattctcgatcgcttggtgggctac
accctgtcccccctgctctggaaaaaaattgcctggggcctatccgccgggcgggtgcag
tcggtggcagtacgcctactcgtccagcgggaacgggcgcggcgggccttccgccaaggc
agctactgggatctcaaagctcagctgacggtggaggctggccagtttgaagccaaactc
tggacattggcaggccaacggctagccacaggcaatgactttgacgaaagcaccggccaa
atcattgccggccgtcaggtctgtctgctcgatcagcaagaagcggaagccctgcgcgat
cgcctccagacccagccctggcaagtaaagtcgctggaagaaaaacccaccactcgcaaa
ccagccccacccttcaccacttcgaccttgcagcaggagtcgaaccggaagctacggctc
tcagcccgggaaacgatgcgagtcgcccagagcctctacgagcgaggctttatcacctac
atgcggacggattcggtccatctgtcgcaacaggcgatcgaggcagctcgcagctgcgtt
gagcagatgtatggcaaaaactatctcagcccccagcctcgccagttcaccaccaagagc
aaaaacgcccaggaagcccacgaagcaattcggccagcggggaacacgtttaggctgccc
caagaaacgggactgtcgggcgccgagtttgcgctctacgacctgatctggaagcgcacg
atcgcctctcagatggctgaggcccgacaaaccatgctgagtgtgttgttggaggttgat
aatgctgagttccgcgccagtggcaagcggatcgatttcccgggcttcttccgcgcttac
gttgaaggctcagacgatcctgatgcagccctagaagatcgcgaaattctgctgccggcg
ttgaaggtgggcgatcgccccacctgtcaggaactggccgcgatcggtcatgaaacccag
ccgccagcccgctacaccgaagcctcactggtcaaaatgctggagaacgagggcattggt
cgtcccagtacctacgccagcatcatcggcacgatcgtcgatcgcggctatgcccaattg
gtgagcaacactctaacgccgaccttcacggcttttgcagtgacagcattgctggagcaa
catttccccgatttggtggacaccagcttcagtgcgcggatggagcagtccctcgacgac
atttccaatggtgaagtcgactggctaccctatctcagtcagttttatcggggcgatcgt
ggcttggaagaacaggtcaaacttcgcgaaagtgaaattgatccggctgccgctcgcaca
gtcgcgctggagggactgcccgccaaagtccgtattggtcgttttggcgcttacctcgag
gccgaggccgatggagaaccgatcaaagcaaacctgcccaaggagctaacgcctgctgat
ttggatgtccagcgagtggaaacactactgcggcaaaaaaccgaagggccggaccaactg
ggaacacatcctgaaaccgacgagccgatttacctgcttacgggtgcctacggtccctac
gtccaacttggggcagccaccgaggaaaaacccaagccgaagcgggcttctttgcccaag
ggtatgagcttagaaacgatctcgttggagcaagccgtagggctgttgtcgctaccacgt
accttgggcgagcatcccgaaacaggacgacggatccaagcaggtctagggcgatttgga
ccctacgtggtctgcgatctggggggtggtgagaaggattaccgatcgctcaaagccgat
gatgatgtgctgaccatcgatctcgatcgtgccctcgaactcctggcacaacccaagaag
agtcggggtcgcggcaaggaaccgattcgggaggttggcctccatcctgatgaccaagcc
cccattcaaatttttgagggtccctacggtctttacctcaaacatggcaaggtcaatgcc
tcgctgcccgaggatgagaagccggagacgatcagcctggaaacagcagttgcagcctta
gcggccaaagccggtcaggccaaggctaaaggaggccgccgtagtacgggaacaccaaag
tccggtgaaacgaaagcccgaacaaccaaaacgactaagaaaaccacgactcgtcggact
acgagccgctaa
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