Synechococcus elongatus PCC6301: syc0425_c
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Entry
syc0425_c CDS
T00163
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syc
Synechococcus elongatus PCC6301
Brite
KEGG Orthology (KO) [BR:
syc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syc03016
]
syc0425_c (rnb)
Enzymes [BR:
syc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
syc0425_c (rnb)
Transfer RNA biogenesis [BR:
syc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
syc0425_c (rnb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
RNase_II_C_S1
SapC
Motif
Other DBs
NCBI-ProteinID:
BAD78615
UniProt:
A0A0H3K059
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All DBs
Position
complement(477504..479516)
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AA seq
670 aa
AA seq
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MEAGTLIEFRLGGQRHLGVLDRPDGKKNWIVVDERGANRSLHPRDFTYVVAGQIYKPQEL
AAFRREVEALLDPDALAIAWEMLVDEGEEAELAILSDLLFSQADPAALYATFRLLDDDRT
YFRQRRDRYEARSREQVAEQQRQLAIAAEKARLWQNFLDRCQQAQGGETVTWIDSDRPWL
KALEQWALFSEDGNNTRAATEVLTALGRQASAQAAHDLLVALGYWQPHENLFLRRSQVPT
TFPVAVMDVVQTCLDAPPVDRDRRQDLSHLKVYTIDDESTREIDDGLSCQRLSDGRLQLW
VHVADPTRLIEPGDALDLEARRRSTTIYLPTGMVPMFPLELAAGPMSLVQGQACCALSFG
ICLDEQGAIASYEIVPSQIRPTYRLTYEDVDEMLDLGVTAEQELLDLWEMAQRRRRWRHQ
QGAIAINMPEAVIKVSEADDQISISVLEESAARALVAEMMILAGEVAGHYGATNGLPLPF
RGQPQPELPSEEELLALPAGPVRSCAIRRCMPRSETSLNPQRHASLGLDRYSQVTSPIRR
YTDLVTHFQIKAHLRGDQLPFSAEELETLLQSTLSLSYEAVLVERQTNRYWGLEYLRRQG
DRIWSSLILRWLREHEQLALILIEDLGLELPIRLSQPVELGDRLALRVTHADPRQDRIQF
EVVESLESVD
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtggaagcaggaacgctgattgagtttcgcctaggtggtcaacgccacttaggcgttttg
gatcgtccagacggcaaaaaaaattggattgtcgtcgatgaacgcggggcaaaccgctcg
ctccacccccgcgatttcacctatgtggtggcgggacaaatctataaaccccaagagctt
gctgcttttcgcagggaagtggaggccctactcgaccccgatgcgttagcgatcgcttgg
gaaatgttggttgatgaaggggaagaggcagaactcgcaatcctcagtgatctgctgttc
tcacaagcggatccagccgccctctacgcgacctttcgtctcttggatgacgatcgcacc
tacttccggcagcgccgcgatcgctacgaagcgcgcagccgtgagcaagtcgctgagcag
caacgacagctggcgatcgctgctgaaaaagcccgactctggcaaaactttctcgatcgc
tgtcagcaggcacaaggtggtgagactgtcacttggatcgatagcgatcgcccttggttg
aaggccctcgaacaatgggcactctttagcgaagacggcaacaacactcgagctgcgacc
gaagttctgacagctttaggtcgccaagcctcggctcaggctgcccatgacctgttggtc
gccttgggttactggcaaccgcacgaaaatctctttttgcgccgcagccaagtcccgaca
acattccctgtcgcggtgatggatgtggttcaaacttgcttagatgctcctcccgttgac
cgcgatcgccgtcaggatctcagccatctcaaggtctacacgatcgatgatgagagtaca
cgggagattgacgatggtttgagctgtcagcggctcagcgacggtcgcctccaactctgg
gtgcatgttgctgacccaacccgcttgattgaaccgggcgatgccctagatctggaagcc
cgtcgccgcagcaccaccatctatttacccaccggcatggtaccgatgttccccttggaa
ctggcggccggtccgatgagtttggtgcaagggcaagcctgctgtgccctcagctttggt
atctgtctggatgagcaaggggcgatcgccagctacgagattgtgcccagccaaattcga
ccgacctatcgcctcacctacgaagatgtcgacgaaatgctcgacctcggcgtgacagca
gagcaagaattactcgacctctgggagatggcccaacggcgacgccggtggcggcaccag
caaggggcgatcgccatcaacatgcctgaggcggtgatcaaggtctctgaagccgacgat
caaatctcgatttccgtgctagaagaatcggctgcgcgtgccctcgtcgccgaaatgatg
attctggcaggtgaagtcgcgggccactacggcgcaacaaacggcttaccgctaccgttc
cggggacagccccaaccggaattaccgagcgaagaagaattgctggcgctgcctgccggt
cctgtccgatcctgtgcaatccggcgctgtatgcctcgcagcgaaacgagtctcaacccc
cagcgccatgccagcttgggcctcgaccgctactcgcaggtcacctccccgattcggcgc
tacaccgacctcgttacccacttccaaatcaaggcgcatctgcggggcgaccaactcccc
ttcagtgcagaagaactggaaacactgctgcagagtaccctcagcctcagctatgaagcc
gtgctggtggagcggcagaccaatcgctactggggtctggagtacctgcgtcgtcagggc
gatcgcatctggtcgtccctgattctgcgctggctgcgagagcacgagcaacttgcgttg
attctgattgaagaccttggcttagagctgccaattcgcctcagtcagcccgtggaactg
ggcgatcgcttggctctacgcgtcacccacgccgacccgcgccaagatcgcatccaattt
gaggtggtcgaaagcctagagtctgtggactag
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