Synechococcus sp. CC9605: Syncc9605_0178
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Entry
Syncc9605_0178 CDS
T00292
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
syd
Synechococcus sp. CC9605
Pathway
syd03420
Nucleotide excision repair
syd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syncc9605_0178
03430 Mismatch repair
Syncc9605_0178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syd03400
]
Syncc9605_0178
Enzymes [BR:
syd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syncc9605_0178
DNA repair and recombination proteins [BR:
syd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Syncc9605_0178
MMR (mismatch excision repair)
Other MMR factors
Syncc9605_0178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
NPHP3_N
DEAD
AAA_11
AAA_16
ResIII
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
ABB33954
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All DBs
Position
183158..185548
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AA seq
796 aa
AA seq
DB search
MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT
NKAAREMKERLEVLLAQRLAQSQYGQPWSTLPPVEQRQLRSCIYREVTKELWIGTFHALF
ARMLRYDIDKFKDAEGLTWTKQFSIYDEADAQSLVKEIVTQELQLDPKRFEPKKTRWAIS
NAKNQGWLPDQLEANAEGQRGKLTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNDQV
RSYWHRRFRHVLVDEYQDTNRTQYDLIKLLVTDGKDPQDVEDWSGRSVFVVGDADQSIYS
FRAADFTILMGFQDDFGDQAPDDSTQTMVKLEENYRSTATILEAANALIANNSERIDKVL
RPTRGEGELITLTRCDDEIAEAEAVVHRMRTMEAANPELSWGDMAVLYRTNAQSRAIEES
LVRWGIPYIVVGGLRFYDRREIKDLLAYLRLLVNPADTVSLLRVINVPKRGIGKTTIQRL
TDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCDLVNDLKARSRDVAPSELIQQVME
KSGYVSELIADGTDEAEERRRNLQELVNAALQYQEENDEGYLEGFLATAALSSDADSKDT
AADRVTLMTLHSSKGLEFPVVCLVGLEQGLFPSYRSLDDPASLEEERRLCYVGITRAKER
LFISHACERRLWGGMREAAVPSVFLSELPEALIQGDIPQTGGAALRRERRLDRLTRVDRD
KPSSAPANAVRRRQAGPAPGRSWQVGDRVIHASFGVGEITHTFGSGEKVSIAVKFAGMGP
KILDPRLAPIEPVTTA
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcttggccggccttaacgacgcccaacgacgggcggtggaccatcacgagggg
ccgctgctggtggtggcgggagctggcagtggtaagacgcgcgccctcacccatcggatc
gctcacctgatcggggagcatggtgccgatcccgctcagatcctggcggtgaccttcacc
aacaaagccgcccgcgagatgaaggagcggcttgaggttcttctggcacaacgtctggcc
cagagccagtacggccagccctggagcaccctgcctccagtggagcagcgccagctgcgc
tcatgcatttacagggaggtgaccaaggagctgtggatcggcaccttccatgccctgttc
gcgcggatgctccgctacgacatcgacaagttcaaagacgcggaaggactcacctggacc
aagcagttttcgatctacgacgaggccgatgcccagagcctcgtgaaggagatcgtgact
caggagttgcagctggatcccaagcggttcgagcccaaaaagacccgctgggccatcagc
aatgccaagaaccagggttggctgccggaccagcttgaagcgaatgcggaaggccagcgg
ggcaagctcacggccgatgtctatcggcgttatcgcaaagcgttggcggccaacaacgcc
ttggatttcgacgatctgttgctgctgccggttcagttgctccagcagaacgatcaggtg
cgcagttactggcaccgccgctttcgccacgtgctggtggatgaataccaggacaccaac
cgaacccagtacgacctgatcaaactgttggtcaccgatggcaaggatcctcaggatgtt
gaggactggtcaggccgttccgtctttgtggtcggtgacgccgaccaaagcatctatagc
ttccgtgcggctgacttcacgatcctgatggggttccaggacgatttcggcgatcaggcg
ccggatgactccactcagacgatggtgaagttggaggagaactaccgctccaccgccacc
atcctcgaggcggccaatgccctgatcgccaacaacagtgaacggatcgacaaggtgctc
cgtcccacgcgaggtgagggggagctgatcaccctcacccgctgtgacgacgagatcgcc
gaggcggaagccgtggtgcaccgcatgcgcacgatggaagcggccaaccccgagctcagc
tggggggatatggcggtgctgtaccgcaccaatgctcagtcccgggccattgaggaatcc
ctggtgcgctgggggatcccttacatcgtggtgggggggctgcgcttctatgaccggcgc
gagatcaaggatctgctggcctatctgcggctgttggtgaatccggctgacaccgtcagc
ctgctgcgggtgatcaacgttccgaaacggggcatcggcaagaccacgattcagcgcctc
accgatgcggccaatcaacttgggattccgctgtgggacgtggtgagtgaccccgaagcg
gtgcgctccctcggcggccgttcggccaagggtctgctccagttttgtgacttggttaac
gatctgaaagcccgcagccgtgacgtggccccatcggaattgattcagcaggtgatggag
aagagcggctatgtcagtgagttgattgcggatggcaccgatgaagcggaggagcgacgc
cgcaacctgcaggaactggtgaatgccgctctccagtatcaggaggaaaacgacgagggt
tacctggagggattcctggccacggcggccttgtctagcgatgcggacagtaaagacacg
gcagccgatcgcgtcaccttgatgacgctccatagcagcaagggactggagttcccggtg
gtgtgcctggtgggtctggagcagggcctgttccccagctaccgctccctggatgatccg
gcttcactggaggaagagcgtcggctttgttatgtgggcatcactcgcgcgaaggaacgg
ctgttcatatcccacgcctgtgaacgtcgtctctggggtggcatgcgtgaagcggctgtg
ccctctgttttcctttcggagctgccggaggccctgatccagggcgacattccgcagacc
ggaggggcggcgcttcggcgtgaacggcgcctggaccggctcacgcgggtggaccgcgac
aagccctcatcggcccctgccaatgccgtgcgtcgccgccaggctggcccagctcctggc
cgcagctggcaggtcggcgatcgggtcatccacgccagcttcggggttggcgaaatcacc
cacaccttcggcagcggcgagaaggtgtcgattgcggtcaagtttgcggggatgggcccc
aagatccttgatccgcgcctggcgccgattgaacccgtgaccaccgcttaa
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