Synechococcus sp. CC9605: Syncc9605_0313
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Entry
Syncc9605_0313 CDS
T00292
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
syd
Synechococcus sp. CC9605
Pathway
syd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Syncc9605_0313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syd03019
]
Syncc9605_0313
03009 Ribosome biogenesis [BR:
syd03009
]
Syncc9605_0313
Enzymes [BR:
syd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Syncc9605_0313
Messenger RNA biogenesis [BR:
syd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Syncc9605_0313
Ribosome biogenesis [BR:
syd03009
]
Prokaryotic type
rRNA processing factors
Syncc9605_0313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ABB34089
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All DBs
Position
318140..320080
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AA seq
646 aa
AA seq
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MPQQIVIAEQLRIAAVLTDERVDELIVAQGRYQIGDVYLGTVENVLPGIDAAFVNIGESE
KNGFIHVTDLGPLRLKKGSAGITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLV
LQPHGQGVNISRRISSDAERNRLRALGVLIKPPGAGLLIRTEADSISEELLIEDLESLLR
QWEAIQQAAETAAPPVLLNRDEDFIHRILRDHMGPDLARVVVEDAAAVGRVSSFLGADAS
NVLVEAHSEPSELLEHYKVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRS
ANARETVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEYFTTAVRDDSA
RPQIAQLSELGLVELTRKRQGQNIYELFGRACPSCGGLGHVAVLPGKDLLQPLATATGLV
RSAASARAEVVAPGENGGNGRRRRGGRGRGSQDAVLPLETSDTAAPEVSTQEAQEPATAR
RQDPEMVAVPMTDEQQQLFGWLGLNPALLLEEPPASDNVVVRVVRPGEDEQEVLEAARQQ
LAASSGRRRRRGGRGGRSGSRNGASQPTSNSSSETPVVVTSSAPDEAAPLMVEITPLEAV
TNLTITEPEPAPISEPAEPEPVAVVEPAEPEEPRRRRRRSSAVATV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgccccagcaaattgtcatcgcggagcagctgcgcatcgcagcagtgctaaccgatgaa
cgcgttgatgaactaatcgtcgcgcagggtcgttatcagatcggagatgtctatttagga
acggtagaaaatgttctgccaggcattgatgctgccttcgtcaatatcggtgagagtgag
aaaaacgggttcattcatgtcaccgatcttgggccgctgcgtctgaagaaaggttcggct
gggatcactgaacttctggagcctcgccaaaaggttctggttcaggtgatgaaagaaccg
accggcaccaaaggcccacggttgacgggaaatctggctctgccaggtcgctacctggtg
cttcagccccatggccagggagtcaatatctcccggcgcatcagttccgatgcagaacgg
aaccgtctgcgtgcactgggtgttctgatcaagccgcctggagctggtctgctgatccgt
acggaagccgacagcatcagcgaagaattattgattgaggatctggaatccttgctacgc
cagtgggaggcgattcagcaagccgctgaaacggctgcaccgccggtgctgctcaaccgc
gacgaagacttcatccatcggattctgcgggaccacatgggcccggatctggcccgggtt
gtggtggaagatgccgccgctgtgggtcgtgtcagcagtttcctcggtgctgatgccagc
aatgtgctggtggaagcgcacagtgaacccagcgagttgctggagcactacaaggtcaat
gcagctatccgcgatgcgctgaagccacgggttgatctgccgtccggtggctacgtgatc
atcgagcccaccgaagcgctcactgtgatcgatgtgaactcgggctcgttcacacggtcg
gccaatgcgcgcgaaactgtgctgtggaccaactgtgaggcggcgatcgaaatcgctcgc
cagctcaagcttcgcaacatcggtggggtaatcatcatcgacttcatcgatatggattcc
cgccgtgatcagctccagctgctggagtatttcacgacagctgtccgtgacgactcagcc
cgcccgcagatcgcacagctcagcgaactgggcctggtggaactcacccgcaagcgacaa
gggcagaacatctatgaactgttcggtcgggcctgccccagctgtggtggtttgggccat
gtggccgttctccccggcaaagacctgcttcaacctctggcgacggccacgggattggtg
cgttcggcggcctctgcccgcgccgaagttgttgcgccaggagagaacggtggcaatggc
cgtcggcggcgcggtggtcgagggcgcggcagtcaggatgccgtccttccgctagagacg
tccgacaccgctgcccctgaggtctccacccaagaggctcaggagcccgcgactgcccgt
cgtcaggatcctgaaatggttgccgtcccgatgacggacgagcaacagcagttgtttggt
tggctggggttgaaccctgccctgttgctggaggagccccctgcatccgacaacgtcgtt
gtcagggttgtgcgtcctggtgaggatgagcaggaggtgcttgaggcggcgcgtcagcaa
ttggcggccagttccggaaggcgacgtcgtcgcggcggacggggtggtcgttctggctca
cgcaatggggcgagtcagcccacatcgaactcttcttctgagacgcctgttgtcgtgacc
tcatccgccccggatgaggcggctcccttgatggttgagatcacccccttggaggcggtg
accaatctgacgatcaccgaaccagaaccggctcccatcagcgaaccggctgagcccgag
cctgtggccgtggtggaaccagctgagcctgaggagcctcgccgtcgccgtcgccgctct
tctgctgtcgccacggtctga
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