Synechococcus sp. CC9605: Syncc9605_0570
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Entry
Syncc9605_0570 CDS
T00292
Name
(GenBank) RNA binding S1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
syd
Synechococcus sp. CC9605
Pathway
syd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Syncc9605_0570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syd03019
]
Syncc9605_0570
03016 Transfer RNA biogenesis [BR:
syd03016
]
Syncc9605_0570
Enzymes [BR:
syd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Syncc9605_0570
Messenger RNA biogenesis [BR:
syd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Syncc9605_0570
Transfer RNA biogenesis [BR:
syd03016
]
Prokaryotic type
tRNA degradation factors
Syncc9605_0570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_RRP5
PCB_OB
KH_KhpA-B
F10E9_4_C
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
ABB34344
UniProt:
Q3AM38
LinkDB
All DBs
Position
complement(554419..556584)
Genome browser
AA seq
721 aa
AA seq
DB search
MQGQTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICD
YEERLYAAGRIPGSYMRRESRPPERATLTARLIDRPMRPLFPSWLRDDLQVVATCLSLDE
RVPADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLVVAGT
PDGVVMVEAGANQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGITQVKPEKPDEDSTV
PAYLEKQCSKAISAVLSKFDQSKDERDTALETVKGEVSETIAGLKEDHAVRQALASSPKL
LGNSFKALTKKLMRQQILKDGKRVDGRGLDEVRQISAMAGVLPRRVHGSGLFQRGLTQVL
STATLGTPSDAQEMDDLHPNTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI
LPVLPEKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE
GDEVRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLSVKTVAEAVNQARPARL
HILEKMLEAIDTPRDNLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED
GGIVTIASHDGAAAEEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI
SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQAGDAADVEPQPTPVAPL
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaggacaaacccagtcgatctcctttgacggacgcgagattcgactgaccaccggg
cgcttcgcccctcaggcgggaggatccgtcttggtggagtgtggcgacaccgccgtgctt
gtgaccgcaacccgttcgggcggtcgtgaaggcattgattttctgccgctgatctgcgac
tacgaagagcggctttatgcagccggccgcattcccggcagctacatgcgtcgtgagagc
cgcccacctgaacgcgccactctcaccgctcgactgattgaccgccccatgcggccgctc
ttccccagctggctgcgcgacgacctgcaggtggtggccacctgcctgtccctcgatgag
cgggtccccgccgatgttctggcggtgacgggcgcctcgattgccacgcttctggcgggc
atccccttcaacggcccgatggcagccgttcgggtgggcctgctgggcgatgacttcgtc
ctcaacccgagttaccgggagatcgaacggggtgatctggacctggtggttgccggcacc
cccgacggcgtggtgatggtcgaggccggcgccaaccagctgcccgagcaggacgtgatc
gaggcgatcgatttcggttacgaagccatttgcgaactaatcaaggctcaggaacaactg
ctgaaggatctgggcatcactcaggtgaagccggagaaaccggacgaagacagcaccgtt
cccgcctacctggagaagcagtgcagcaaagcgatcagcgccgtcctcagcaaatttgat
cagagcaaggacgagcgggacacagccctggaaaccgtgaagggcgaggtgtccgagacc
atcgcaggtctgaaggaagaccatgccgttcgccaggctctggccagcagccccaaactc
cttggcaacagcttcaaggcgctgaccaagaagctgatgcgtcagcagattctcaaggac
ggcaagcgtgtggacggacgcggcctcgacgaggtgcgtcagatcagcgccatggccggc
gtgctgccgcgccgggtgcatggctccggtctgttccagcgcggactcacccaggtgctc
tccaccgcaacgctgggcacccccagcgatgcccaggagatggacgatctccatcccaac
accgagaagctgtacctgcaccactacaacttccctccttactccgtcggtgaaacgcgg
ccgatgcgctcccccggtcgtcgtgagatcggccatggcgcactggccgaacgcgccatt
cttccggtgcttcccgagaaagacaccttcccctacgtagtgcgtgtggtgagcgaagtg
ctcagctccaatggctccacctcgatgggttccgtctgcggcagcaccctgtcgctgatg
gatgccggtgtgccgctaaaggccccggtgagtggcgctgccatgggtctgatcaaagag
ggcgatgaggtgcggatcctcaccgacatccaaggcatcgaggacttccttggtgatatg
gacttcaaggtggccggtagcgagaagggcatcacagccctgcagatggacatgaagatc
accggcctctcggtgaagacggtggccgaagccgtcaaccaggcacgtccggcacggctc
cacatcctcgaaaagatgctcgaggcgattgacacccctcgggacaacctgtctccccat
gccccacgtctgctcagcttccgcattgatcctgagttgatcggcaccgtgatcggccca
ggtggacgcacgatcaaaggcatcaccgagcgcaccaacaccaagatcgacatcgaggac
ggcggcatcgtgaccatcgcctcccacgatggtgctgcagctgaagaagcccagaagatc
atcgaaggcctgacccgcaaggtgaacgagggcgaggtgttctccggctcgatcacccgg
atcatcccgatcggcgccttcgtggagatcctccctggcaaggaaggcatgatccacatc
tcgcagctctccgaagctcgcgttgagaaggtcgaagacgttgtgaaggtgggcgacgag
gtgaccgtgcgggtgcgcgaaatcgacaaccgcggccgcatcaacctcaccctgagaggc
gtgccccaggccggcgacgctgccgatgtggagcctcagcccaccccggtggcaccgctc
agctga
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