Synechococcus sp. CC9605: Syncc9605_1318
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Entry
Syncc9605_1318 CDS
T00292
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
syd
Synechococcus sp. CC9605
Pathway
syd03410
Base excision repair
syd03430
Mismatch repair
syd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Syncc9605_1318
03430 Mismatch repair
Syncc9605_1318
03440 Homologous recombination
Syncc9605_1318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syd03400
]
Syncc9605_1318
DNA repair and recombination proteins [BR:
syd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Syncc9605_1318
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Syncc9605_1318
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Syncc9605_1318
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DUF3239
Motif
Other DBs
NCBI-ProteinID:
ABB35072
LinkDB
All DBs
Position
complement(1230840..1232696)
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AA seq
618 aa
AA seq
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MVEPSPLRGLDLPLALRCVLRRRGFSSTSEAASFLSPGDLPPTRDHFPDLEQACDRLVAA
CRSRERVAICGDYDADGMTSTALLLRALAPLGAEPEPAIPSRMEEGYGLNPAMVQRLYDD
GVRLLVTVDNGVAAREALELAASLTMQVIVTDHHTIPMERPPMTALIHPATTPEGSPYRG
LAGVGLAYVVAHAVAEALNKPEAIRVARDLFCIGTVADMAPLVGANRSWLLEGLNQLHRS
ECKGVQALQHLAGLGERPLTAEDIGFQLAPRINAVGRLGEPRLVVDLLTAEDPDSAMALA
RRCDDCNRQRRDLCDAIEAEAVALVEAESDEALPSFLLLAQSHWHHGVIGIVAARLMERY
HRPTALLAGEGDGSLRASVRGPIGFAVDRALSSCSDLLTRFGGHPAAGGFTVKAELVHAL
HERLCSEADSWLMTQAQGRPVQPDALLQLKDVNWDLWRHLQSLAPFGIGHPKPLFWSRGV
SVGDRRDLKGGHLALTLRQGESERRAIAWRWDSSAAVPECCDVAYSISINRWQGEQRLQL
ELKAIRAHSELVLIDRGTRQYTARWTQSSGLTLTNGDGETLQASIKQEESLTSDNDLARD
QRVIQLLEEACLGLGLRP
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
gtggtggaaccatcgccactgcgcgggcttgatttgccgctggcgctgcgctgtgtgctg
cggcgccgcggattcagctccacatccgaagccgcgagctttctctcccctggtgatctg
ccacccacccgcgatcatttccccgatcttgagcaagcctgtgatcgtctggtagcggcc
tgccgctcccgtgaacgtgtcgccatctgtggtgattacgacgccgatgggatgacgagc
acagcgctgctgttgcgggcattggccccgctgggtgcagagccggaacccgccattccg
tcgcggatggaagagggatatggcctcaatcccgccatggtgcagcggctctatgacgat
ggagtgcggctcctggtcaccgttgataacggagtggctgcgagggaagcgcttgaactg
gccgcaagtttgaccatgcaggtgatcgtgaccgatcaccacaccatcccgatggagcgg
ccgccgatgactgcactgattcacccggccaccacgccggagggctcgccctaccgcggt
ctggccggtgtggggctcgcctacgtggtggcccatgccgttgccgaggcgctgaacaaa
ccagaagccatccgtgttgcacgtgatctgttctgcatcggcacggtggccgatatggca
ccactggtgggggccaaccgcagttggttgcttgaggggctcaaccagctgcaccgctcc
gagtgcaagggcgttcaagcacttcagcacctggccggattgggtgaacggccgctgacg
gcagaggacatcgggtttcagcttgcaccgcgcatcaatgccgtcggtcgcctcggcgaa
ccgaggcttgtggtggatctgctcacagctgaggatcctgattcagcgatggccctcgca
cgacgttgtgatgattgcaaccgtcagcgaagggatctctgcgatgcgatcgaagcggag
gccgtggctctggtggaagcggagagcgatgaagcacttccgtcctttctgctcctggca
caaagtcactggcaccacggggtgatcggcattgttgctgctcggctgatggagcgttac
caccgtcccaccgctcttctggccggtgagggggatggaagcctgcgggcttcggtgcgg
ggaccgatcggcttcgctgtggatcgcgctctttccagctgcagtgatctgctgacccgt
tttggcggccatcccgctgcaggtgggttcacagtgaaagcggagcttgtgcatgcactg
catgagcgtctctgttccgaggccgatagctggctgatgacccaggcccaggggcgtccc
gtgcaacccgacgctctgctgcagttgaaggatgtgaactgggatctgtggcgccacctg
caatccctggcacccttcgggatcggtcatcccaaacctctgttctggtcgaggggggtg
agcgttggggatcggcgagacctcaagggagggcatctggcgctgacgctgcgccaaggg
gagagtgagcgtcgcgccatcgcctggcgatgggattcatcggcagctgttcccgaatgc
tgtgacgtggcctacagcatttcgatcaaccgctggcagggagaacagcgtctccaactg
gagctcaaagccatccgcgcccactccgagttggtcttgatcgaccgcggcacacgccag
tacacagcccggtggacgcaaagctcaggtttgacgctcaccaatggcgatggtgagacc
ctgcaggcgagcatcaaacaagaagaatccctcaccagtgacaacgacctggcaagggat
cagcgggtgattcagttgctcgaagaagcctgtctgggcttagggcttcgtccctga
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