Synechococcus sp. CC9605: Syncc9605_1648
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Entry
Syncc9605_1648 CDS
T00292
Name
(GenBank) DEAD/DEAH box helicase-like
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syd
Synechococcus sp. CC9605
Pathway
syd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Syncc9605_1648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syd03019
]
Syncc9605_1648
03009 Ribosome biogenesis [BR:
syd03009
]
Syncc9605_1648
Enzymes [BR:
syd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Syncc9605_1648
Messenger RNA biogenesis [BR:
syd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Syncc9605_1648
Ribosome biogenesis [BR:
syd03009
]
Prokaryotic type
rRNA helicases
Syncc9605_1648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
B12-binding
Cas3-like_C_2
AAA_30
WH_MCM3_C
DEDD_Tnp_IS110
Motif
Other DBs
NCBI-ProteinID:
ABB35397
LinkDB
All DBs
Position
complement(1515608..1517431)
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AA seq
607 aa
AA seq
DB search
MSLISEINQAKPPFMTEQQQQRDDSACAVDLSASELPEANSNAEVFTTTITSAEPESGFA
GFGFSEALLRTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLE
SGQKTPQALVLAPTRELAMQVAESFKAYSAGHPHLKVLAVYGGTDFRSQISALRRGVDVV
VGTPGRVMDHMRQGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILDQLPEQRQVVLFSAT
MPPEIRRLSKRYLKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGSEGVI
IFARTKAITLTVAETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGL
DVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFIRNLERATGQPIE
AMEVPGNTAINQGRLDRLRKRLSDAAQSQRPDADEAALLQELMQRVATELELSPEQLAMA
ALNLAIGPDALLRKGDDDWIQNTRRNDRDRDRHSGDRRERRERPARAPEENMQRYRVEVG
HRDRVKPGNLVGAIAGETGLQGRMIGRIQIFDNHSLVDLPKGMPEDVFNSLQRLRVMNRE
LQISKAS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgatttcagagatcaatcaggcgaagccaccttttatgaccgaacagcaacag
cagcgcgacgattccgcctgcgcagtggatctttctgcatccgaactgccggaagccaac
tccaatgctgaggtgttcaccaccaccatcacatcggctgaaccggaatccggttttgcc
ggttttggtttcagcgaggccctgctccgcaccctggcggacaagggatacagcgaacct
tcccccattcagaaggcggccttccccgagctgatgcttggccgcgatttggtgggtcag
gcccagaccggcaccggtaaaacagcagcgtttgcgttgccgttgctcgagcgtctggaa
agcggccagaaaacaccccaggctctcgttctcgcccccacacgggagctggcgatgcag
gtggccgaatcgttcaaggcctattccgccggccatccccatctgaaggtgctggcggtg
tacggcggcacggatttccgctctcagatcagtgctctcaggcgcggtgtggatgtggtg
gtaggcacccctggccgggtgatggaccacatgcgtcagggcacgctcgacaccagtggt
ctgcgcagcctggtgctcgatgaagcagacgaaatgctccgcatgggcttcatcgacgat
gtggagtggatcctcgatcagcttcctgagcagcgtcaggtggttctgttctccgcgacg
atgcctcctgagatccgtcgtctgtccaagcgttatctcaaggatcctgctgaggtcacg
atccgcaccaaggatcaggaaggcaagcggatacgccagcgctcgatcacggtgccgatg
ccgcacaagctcgaagccctgcaacgggttctcgacgcctgtggtagtgagggtgtgatc
atcttcgcccgcaccaaggcgatcaccctgaccgtggctgaaacccttgaagccggcggc
catcaggtggcggtgctcaatggcgatgttccccagaaccagcgggaacgcaccgtggag
cggttgcgcagtggatcggtcgacatccttgtggccaccgacgttgcggcgaggggtctt
gatgtggagcgcatcggcctggtgatcaactacgacatgccgttcgacagcgaggcctac
gtgcaccgcatcggccggacgggccgggctggacgcaccggcgaagcggttctgttcgtg
accccacgggaaaggcgcttcatccgcaacctcgagcgggccacggggcagccgatcgaa
gcgatggaggtgcccggcaacacggccatcaaccagggacggctcgaccgcctgcgcaag
cgtttgagtgatgcagcccaatcccaacgtcctgatgccgatgaagcggccttgcttcag
gagttgatgcagcgggtggccacggaactcgagctaagccccgagcagctggccatggca
gcactgaacctggccatcggacccgatgcgctgctgcgcaagggtgacgacgactggatt
cagaacacccgtcgcaacgaccgcgaccgtgatcgccattcaggagatcgccgtgagcgg
cgcgagcgtccggcacgggcacctgaggagaacatgcagcgttaccgcgttgaggtgggt
caccgcgatcgggtcaaacccggcaacctcgtgggcgccatcgccggtgagaccggactg
cagggccggatgatcggtcggatccagattttcgacaatcacagcctggtggatctcccc
aagggcatgccagaggatgtgttcaacagccttcaacgcctgcgcgtgatgaaccgcgaa
ctgcaaatcagcaaggcctcttga
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