Synechococcus sp. CC9605: Syncc9605_2322
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Entry
Syncc9605_2322 CDS
T00292
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
syd
Synechococcus sp. CC9605
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syd03019
]
Syncc9605_2322
Enzymes [BR:
syd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Syncc9605_2322
Messenger RNA biogenesis [BR:
syd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Syncc9605_2322
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
Cas3-like_C_2
AAA_30
AAA_22
HA2_C
Motif
Other DBs
NCBI-ProteinID:
ABB36054
LinkDB
All DBs
Position
2129466..2131970
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AA seq
834 aa
AA seq
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MSQFPIDALLEQICSAVRPGQTVLLQAPPGAGKTTRVPLALIGALSEGQGIFDERQKIWM
IEPRRLATKAAAARLAASLGEDIGARIGYAVRGEQKRSGRTQVEVITDGLFLRRLQSDPS
LAGVGCVIFDEFHERGRDADLSLALLREARPLLNSDLAVVLMSATLDLSDLRERLPKATV
LESPGRCYQVDTHHQSPRPDEPLPKQVLRAIEQHALDQPQGSGVLVFLPGLAEIERCRQT
LTAAPSLQNWKIQALHGQLPLQQQSSALQRCDPNQDGSIILASAIAESSLTIDGVRLVID
SGLSRQLRYDPNTRMETLETTVSSLASAEQRRGRAGRQCPGRCIRLWSPAEQQRRPPFHP
PELLLADPQPVLIELAQWGAGLGEELPWLDPPPAAAMQEGQHGLQQLGLLEHDGRISERG
RLIGGLGVHPRLGMLLLEAHKQGAPQLGCDLAAILSERDPFDRRQIGSDLEARLNSIQRH
PYLRTLSKQLRRQLKRLGASPQERNDSVNAGELILAAFPEWLAQQRPGQIGRYQLRQGRG
ATLLPWDPLQGSPALAVARVDMGGRDTQIQMAVALSQGTLESIAERDGHWHDEASWDPER
ERVRAERQLKLGALVVRRTPQPSPAAGLCRTLLIEQLKKNASLDALPWTENSHQLRQRLA
WMHQQVGVPWPGRDLTTLLEQADTWLGPSLEGCLGWSDISATALKEALWGDLDWSFRQQL
DNLLPRRIPIPSGRQAALHYTADEVILAVKLQEMFGSDDGPHVLNGRIPVTLELLSPAGR
PLQRTRDLKGFWQGSYQEVRREMRGRYPKHPWPEDPRQALPTARTKRRSDGRQP
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
ttgagccagttcccgatagacgccctgttggagcagatctgttctgcggtccgcccaggg
caaacggttctgctccaggcaccgcccggggcaggaaaaaccacacgggtccccctggca
ctgatcggggcgctatcggaaggtcagggcatttttgacgagcgtcagaaaatctggatg
atcgaaccgcggcggctggccaccaaagctgccgccgcccgccttgctgcaagccttgga
gaagacatcggtgcgcgcatcggttatgcggtgcgcggggaacagaagcgatccggccgc
acccaggtggaggtgatcaccgacgggctcttcctgcggcgcttgcagagcgacccctcg
ctggctggggtggggtgcgtgatcttcgatgaatttcatgagcgggggcgcgatgcggac
ctatccctcgccttgctgcgcgaggcgaggcctctactgaattcagatctcgccgtggtc
ttgatgtcggccacgctggatctgtccgacctaagggaacggctgcccaaagcgacggtg
ctggaaagcccgggccgctgttaccaggtggacacccaccaccaatcaccacggccggac
gaacccctgccgaagcaggttttacgggccatcgagcaacacgcactcgaccaaccgcag
ggcagcggtgttctggtctttctgccggggctggcggagattgaacgctgcaggcagacc
ctgacggccgccccttccctgcagaactggaagattcaggcgctgcacggtcaactgccc
ttacagcagcagagttcagccctgcagcgctgcgacccaaaccaagacggcagcatcatc
cttgccagcgccattgccgagagctccctgacgatcgatggggtgcgcctggtgattgac
agcggcctcagccgtcaactgcgttacgaccccaacacccgcatggagaccctggagacc
accgtctccagcctggccagtgcagagcagcgccggggcagggcaggacggcagtgcccg
ggccgctgcatccgcctctggtcaccggcagagcaacagcgacggccaccctttcacccc
cctgaactgttgctggccgatccacagcccgtgttgatagaactggcccagtggggggct
gggctgggggaagagctgccgtggctggaccctcctcccgcagcagccatgcaagaggga
cagcacggcctgcaacagctcggcctgctggagcacgacggccgcatcagcgaacgggga
cgactgatcggcggcctcggcgttcaccctcgtctcggcatgctgctgctggaggcccat
aaacagggcgccccccagctggggtgtgatctggcagccatcctcagtgaacgggatccc
tttgatcgccgccagatcggcagcgatctcgaggcccggctcaacagcattcagcgccat
ccttacctgcgaacgctcagcaagcaacttcgccgccaactgaagcgactgggtgcctca
ccccaagagcgaaacgattccgtcaatgccggcgagctgatcctggcggcctttccggaa
tggctggcgcaacagcgtccaggccagatcggtcgctatcagctgcgtcaaggccgcgga
gccaccctgctgccctgggatccactccagggcagtccagccctggccgtcgccagggtc
gacatgggcggccgggacacgcagatccagatggccgtggccctgagccagggcaccctg
gagagcatcgctgagcgagatggccactggcatgacgaggccagctgggatcccgaacgc
gagcgggtccgtgccgaacgccagctcaaactgggggcattggtggtgcgccgaacgcca
caaccttccccagccgcagggctgtgccgcactctcctgatcgagcagctgaagaagaat
gccagccttgatgccctgccctggacggaaaacagccatcagctacgccaacggctggca
tggatgcaccaacaggtgggcgtcccctggcctggtcgcgatttgacaaccctgctggag
caggctgacacctggcttggtccaagcctggagggctgcctgggctggagtgacatcagc
gcgacagccttgaaagaagcactctggggcgatctggactggagcttcaggcaacagctg
gataacctgctgccgcgccgcatcccgatcccctccggccggcaagccgcgctgcattac
accgccgacgaggtgatcctcgccgtgaaactgcaggagatgttcggatctgacgacggc
ccccacgtgctgaatggccgtattcccgtcacgctggaactgctctcaccagccggacgg
cccctgcagcgcacccgtgatctgaaaggcttctggcaaggcagctaccaggaggtgcgc
cgggagatgcgagggcgctaccccaaacacccctggcccgaggatccccgccaggcgctg
ccgacggcccggaccaaacgcagatcggacgggcgacaaccttga
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