Synechococcus sp. CC9605: Syncc9605_2596
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Entry
Syncc9605_2596 CDS
T00292
Name
(GenBank) possible type II alternative RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
syd
Synechococcus sp. CC9605
Brite
KEGG Orthology (KO) [BR:
syd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syd03021
]
Syncc9605_2596
Transcription machinery [BR:
syd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Syncc9605_2596
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
HTH_AsnC-type
HTH_28
HTH_23
HTH_11
MarR_2
HTH_26
HTH_10
HTH_24
HTH_29
Sigma70_r4_2
Spectrin
NirdL-like_HTH
Rrf2
HTH_Tnp_ISL3
HTH_DeoR
DUF4143
NUMOD1
Fe_dep_repress
DivIC
Motif
Other DBs
NCBI-ProteinID:
ABB36324
LinkDB
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Position
2407948..2409081
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AA seq
377 aa
AA seq
DB search
MPSKPRRTGGTRERRSSGTTDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLSQQQK
LAESDAAIGELHRLEELQRREANQHSHWPTKQEWARAADLPLPELQQRIDRGYQAWAEQA
QLEAKDLKLALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGLERAVEK
FDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKRVQQEIASNEGRIA
SIADLARELGISEDTVRQTLARVPRSVSLDTRVGREQDTQLGDLIEDGHATPEQTLTHDE
LHNDLEHLLDELTSREAAVLRRRFGLEDDTPQTLAQIGEELKLSRERVRQIETRALLKLR
QPQRRSKIRDYIQSLDS
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
ttgcccagcaagccccgaaggaccggggggacccgtgagcgccgcagcagcggcaccacg
gatctgctgcggctttatctccaggacatcggccgggtcgacctgctcaccaatgaggag
gaggtcaccctggcccgtttggtgcagcgccgcgaagcactgctcagccagcaacagaag
ctggctgaaagcgatgccgctatcggtgaactgcaccgtctcgaagaactgcaacgccgg
gaagccaaccagcacagccactggccaaccaagcaggaatgggcccgcgcggccgatctg
cccttgcccgagttgcagcagcgaattgaccggggctatcaggcctgggcggaacaggcc
cagctggaagccaaagatctgaaacttgccctccgcaacggacggcgagccaaagaccac
atgattcaggccaacctgcgcctggtggtggcggtggccaagaagtaccaacagcggggc
atggaaatcctggacctggtccaggagggaacgctcgggctggaacgggccgtggagaag
ttcgaccccacccgtggtttccgcttcagcacctacgcctactggtggattcgtcagggc
atcaccagggccatcgccacccagagccgcacgatccgtttgcccgttcacgtcaccgaa
aaactgaaccggatcaaacgggtccagcaggagattgcgagcaacgaagggcgcattgcc
tcgattgcggatctggctcgcgaattgggcatcagtgaagacaccgtgcgccagaccctg
gcccgggtgccccgttcggtgtctctggacacccgtgtcggccgcgaacaggacacccag
ctcggagatctgatcgaggacggccacgccacccccgagcagaccctcacccacgacgaa
ctccacaacgacctggagcatctcctggatgaactcaccagtcgggaagccgctgtcctg
cgccggcgcttcggcttggaggacgacacgccccagaccctggcccagatcggggaagaa
ctgaaactctcaagggagcgcgtccgtcagatcgaaacccgcgccctgctcaagctgcgg
caaccccaacgacgcagcaaaatccgggattacatccagagccttgattcctga
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