Synechococcus sp. CC9902: Syncc9902_0606
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Entry
Syncc9902_0606 CDS
T00293
Name
(GenBank) DNA-directed RNA polymerase
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Syncc9902_0606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sye03021
]
Syncc9902_0606
03400 DNA repair and recombination proteins [BR:
sye03400
]
Syncc9902_0606
Enzymes [BR:
sye01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Syncc9902_0606
Transcription machinery [BR:
sye03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Syncc9902_0606
DNA repair and recombination proteins [BR:
sye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Syncc9902_0606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Fas_alpha_ACP
DUF333
Motif
Other DBs
NCBI-ProteinID:
ABB25574
UniProt:
Q3AZA3
LinkDB
All DBs
Position
614027..615931
Genome browser
AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKITLASPERVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKDLKYKQLLTEDEWLEIEDEIYAE
ESEIENEPVVGIGAEALKQLLEDLSLEEVAQQLREDINGSKGQKRAKLIKRLRVIDNFIA
TGARPDWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQRADDEVM
QVLQEVIDGHPIMLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGEPIITPSQDMVLGSYYLTALQPDATQPEFGDRS
ATFAGLDDVIHAFDDTRIGLHDWVWVRFNGEVEDDDELQEPLKSETLSDGTRIEQWTYRR
DRFDEEGALISRYVLTTVGRVVMNHTIIDAVASA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacagcaacctccgtaccgaaaatcacttcgattacgtcaagatcacacttgca
tcgcccgagcgggtgatggagtggggtcagcgcacccttcctaatggacaggtggttggc
gaagtcaccaaaccggaaaccatcaattaccggacgttgaagcccgagatggacgggctt
ttttgcgagaagatttttggcccttctaaggactgggaatgccactgcggtaagtacaaa
cgtgtgcgtcaccgcggcattgtttgtgaacgttgtggtgttgaggtcacggagagcagg
gttcgccgtcatcggatgggcttcatcaagctcgccgctccggtatcccatgtttggtac
ctcaaggggatcccgagctatgtggccattcttttggatatgccgctccgcgatgttgag
cagattgtttacttcaactgctatgtcgttcttgatccaggtgatcacaaggatctgaag
tacaagcagctgctgacggaagatgaatggctggaaatcgaagatgagatttatgcagaa
gagtctgaaattgagaatgaaccggttgttggcattggtgccgaagccctgaagcaactt
cttgaggatctcagccttgaagaagtcgcgcagcagctacgtgaagacatcaatggcagt
aagggccaaaaacgcgccaagctgatcaaacgtcttcgcgtgatcgataacttcatcgcg
acgggtgctcgccccgattggatggtgcttgacgttatcccagtgattccaccggatctc
cgtccgatggttcagctggatggtggacgttttgctacgtccgatctcaatgatctttac
cgccgcgtgatcaatcggaacaaccgcttggctcggttgcaagaaatcctggcgcccgag
atcattgtccgcaatgagaagcggatgcttcaagaagccgttgatgcattgatcgataac
ggtcgtcgaggtcgcacggttgttggtgcgaataatcggccgctgaaatcactaagcgac
attattgaaggtaagcagggacgtttccgtcagaaccttctcggcaagcgtgttgattat
tcaggccgctccgtgatcgtggtgggtccaaaactgaaaatgcatcagtgtggattgcca
aaggaaatggcgattgagttgttccagccatttgtgattcaccgtctgattcgtcagaac
atcgttaacaacatcaaggcggccaagaaactcattcagcgtgccgatgatgaagtgatg
caggttctgcaagaggtgattgatggtcacccaatcatgttgaaccgggctccaaccctg
caccgattgggcattcaggcctttgaacccaagttggttgatggtcgtgcaatccaactc
catcctctggtttgtccggcgtttaacgccgactttgacggcgaccaaatggccgtccat
gttccgcttgcgatcgaggctcagaccgaggcccgcatgttgatgttggctagcaacaac
atcctctctcctgcaacaggggagccgatcatcactccatcgcaggacatggtgttgggg
tcttattacctaaccgccttgcagcccgatgcaacccaacccgaattcggcgatcgcagt
gcaacgtttgcaggccttgacgatgtcattcatgccttcgacgacacccgcattggcctc
cacgattgggtctgggttcgtttcaacggagaagttgaagatgatgatgaactgcaggaa
ccactgaagtcggaaaccttgagtgatggaacacggattgaacagtggacttaccgacgc
gatcgcttcgacgaagagggagcgctgataagccgttacgtcctcaccactgttggccgg
gtggttatgaatcacaccatcattgatgcggtggcctcagcctga
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