KEGG   Synechococcus sp. CC9902: Syncc9902_0606
Entry
Syncc9902_0606    CDS       T00293                                 
Name
(GenBank) DNA-directed RNA polymerase
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sye  Synechococcus sp. CC9902
Pathway
sye03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sye00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Syncc9902_0606
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sye03021]
    Syncc9902_0606
   03400 DNA repair and recombination proteins [BR:sye03400]
    Syncc9902_0606
Enzymes [BR:sye01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Syncc9902_0606
Transcription machinery [BR:sye03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Syncc9902_0606
DNA repair and recombination proteins [BR:sye03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Syncc9902_0606
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Cas9-BH Fas_alpha_ACP DUF333
Other DBs
NCBI-ProteinID: ABB25574
UniProt: Q3AZA3
LinkDB
Position
614027..615931
AA seq 634 aa
MTNSNLRTENHFDYVKITLASPERVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKDLKYKQLLTEDEWLEIEDEIYAE
ESEIENEPVVGIGAEALKQLLEDLSLEEVAQQLREDINGSKGQKRAKLIKRLRVIDNFIA
TGARPDWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQRADDEVM
QVLQEVIDGHPIMLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGEPIITPSQDMVLGSYYLTALQPDATQPEFGDRS
ATFAGLDDVIHAFDDTRIGLHDWVWVRFNGEVEDDDELQEPLKSETLSDGTRIEQWTYRR
DRFDEEGALISRYVLTTVGRVVMNHTIIDAVASA
NT seq 1905 nt   +upstreamnt  +downstreamnt
atgaccaacagcaacctccgtaccgaaaatcacttcgattacgtcaagatcacacttgca
tcgcccgagcgggtgatggagtggggtcagcgcacccttcctaatggacaggtggttggc
gaagtcaccaaaccggaaaccatcaattaccggacgttgaagcccgagatggacgggctt
ttttgcgagaagatttttggcccttctaaggactgggaatgccactgcggtaagtacaaa
cgtgtgcgtcaccgcggcattgtttgtgaacgttgtggtgttgaggtcacggagagcagg
gttcgccgtcatcggatgggcttcatcaagctcgccgctccggtatcccatgtttggtac
ctcaaggggatcccgagctatgtggccattcttttggatatgccgctccgcgatgttgag
cagattgtttacttcaactgctatgtcgttcttgatccaggtgatcacaaggatctgaag
tacaagcagctgctgacggaagatgaatggctggaaatcgaagatgagatttatgcagaa
gagtctgaaattgagaatgaaccggttgttggcattggtgccgaagccctgaagcaactt
cttgaggatctcagccttgaagaagtcgcgcagcagctacgtgaagacatcaatggcagt
aagggccaaaaacgcgccaagctgatcaaacgtcttcgcgtgatcgataacttcatcgcg
acgggtgctcgccccgattggatggtgcttgacgttatcccagtgattccaccggatctc
cgtccgatggttcagctggatggtggacgttttgctacgtccgatctcaatgatctttac
cgccgcgtgatcaatcggaacaaccgcttggctcggttgcaagaaatcctggcgcccgag
atcattgtccgcaatgagaagcggatgcttcaagaagccgttgatgcattgatcgataac
ggtcgtcgaggtcgcacggttgttggtgcgaataatcggccgctgaaatcactaagcgac
attattgaaggtaagcagggacgtttccgtcagaaccttctcggcaagcgtgttgattat
tcaggccgctccgtgatcgtggtgggtccaaaactgaaaatgcatcagtgtggattgcca
aaggaaatggcgattgagttgttccagccatttgtgattcaccgtctgattcgtcagaac
atcgttaacaacatcaaggcggccaagaaactcattcagcgtgccgatgatgaagtgatg
caggttctgcaagaggtgattgatggtcacccaatcatgttgaaccgggctccaaccctg
caccgattgggcattcaggcctttgaacccaagttggttgatggtcgtgcaatccaactc
catcctctggtttgtccggcgtttaacgccgactttgacggcgaccaaatggccgtccat
gttccgcttgcgatcgaggctcagaccgaggcccgcatgttgatgttggctagcaacaac
atcctctctcctgcaacaggggagccgatcatcactccatcgcaggacatggtgttgggg
tcttattacctaaccgccttgcagcccgatgcaacccaacccgaattcggcgatcgcagt
gcaacgtttgcaggccttgacgatgtcattcatgccttcgacgacacccgcattggcctc
cacgattgggtctgggttcgtttcaacggagaagttgaagatgatgatgaactgcaggaa
ccactgaagtcggaaaccttgagtgatggaacacggattgaacagtggacttaccgacgc
gatcgcttcgacgaagagggagcgctgataagccgttacgtcctcaccactgttggccgg
gtggttatgaatcacaccatcattgatgcggtggcctcagcctga

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