Synechococcus sp. CC9902: Syncc9902_1301
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Entry
Syncc9902_1301 CDS
T00293
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03030
DNA replication
sye03430
Mismatch repair
sye03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Syncc9902_1301
03430 Mismatch repair
Syncc9902_1301
03440 Homologous recombination
Syncc9902_1301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sye03032
]
Syncc9902_1301
03400 DNA repair and recombination proteins [BR:
sye03400
]
Syncc9902_1301
Enzymes [BR:
sye01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Syncc9902_1301
DNA replication proteins [BR:
sye03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Syncc9902_1301
DNA repair and recombination proteins [BR:
sye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Syncc9902_1301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF5530
Motif
Other DBs
NCBI-ProteinID:
ABB26265
UniProt:
Q3AVK2
LinkDB
All DBs
Position
complement(1256502..1260020)
Genome browser
AA seq
1172 aa
AA seq
DB search
MAFVPLHNHSDYSLLDGASQLPSMVERAKELGMPAIALTDHGVMYGAIELLKLCKGTDLK
PIIGNEMYVINGSIDDPQPKKEKRYHLVVLAKNAIGYRNLVKLTSISHLRGMRGRGIFSR
ACVDKDLLQRHSEGLIIATACLGGEIPQAILRGRPEVARDVARWYQDVFGEDFYLEIQDH
GSPEDRIVNSEIVKIAEELDIQLVATNDAHYLTKQDVEAHDALLCVLTGKLISDEKRLRY
TGTEYIKTEEEMGRLFTDHLDPDVVQKAITNTAKVAEKVEDYDILGKYQMPRFPIPDGHT
AVTYLREVTLQGLRDRLELKSDDPIAENYADRMSHELEIMEQMGFPTYFLVVWDYIRFAR
EQNIPVGPGRGSAAGSLVAYALGITNIDPVSNGLLFERFLNPERKSMPDIDTDFCIERRC
EVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRGKPAK
LKAMIGDESPNPEFREKYQGDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLDQLVP
LQRNNDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTRIDPDKLPPQ
DADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDAGLIPKFI
NRKHGREAIDFAHEILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRRAMGKKKV
SEMQKHRGIFVEGAKKRGVDVKVSDELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAH
YPVAYMAALLTVNAGAADKVQRYISNCNAMGIEVMPPDLNASLIDFTPNGDRILFGLSAV
RNLGDGAIRRLIESRENDGPFRSLADLCDRLPSSVLNRRGLESLIHCGAMDAMDPNANRA
QLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPAEDDGPTDLSMAPKAAPVPDYPPSEK
LRLEKDLVGFYLSDHPLKQLTPSSRLLAPIGLGSLEEQPDKAKVSAITMITELRQVTTRK
GDRMAILQLEDLTGSCEAVVFPKSYARLADHLMAEARLLVWAGVDRRDERVQLIIDDCRA
IDDLTLLLVQLPSDQANDIAIQHKLRECLTQHRPERDELGVKVPVVAEVCLGDSVRYVRL
GAQFCVRDPIAAVQALNDQSFTARCSDRLVLG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgttcccctccacaaccacagcgattacagcctgcttgacggggcctcgcag
ttgccgtcgatggtggaaagggcgaaggagctgggcatgcccgctattgcgctcaccgat
cacggtgtgatgtatggcgcgatcgagctgctcaagctttgtaagggaaccgacctaaag
ccaattattggcaacgagatgtatgtcatcaatggttcgattgatgatcctcagccgaaa
aaagagaagcgatatcacctcgttgtgttggcaaagaatgccatcgggtatcgcaatctg
gtgaagctcaccagcattagtcatctgcgtggcatgcggggccgtggaatcttttcccgg
gcatgtgtcgataaagatttactccagcgtcacagcgaaggcctcatcattgccacggct
tgtctcggaggagagattccccaagcgattttgagaggtcgtcctgaagttgcccgcgat
gttgcccgctggtatcaagacgttttcggagaagatttttatctagaaatccaagaccac
ggatctcctgaagaccgaattgtcaattccgaaatcgtcaagattgccgaggaactcgat
attcaattggtggcgacaaatgatgcccactacctcacgaaacaggatgtggaggcgcac
gatgcgctcctatgcgtactaaccggaaagttaattagcgatgaaaaacggcttcgctac
accggtacggaatatatcaagacagaagaagagatgggccgtttatttacggatcatcta
gaccctgatgttgtccaaaaggccataacgaacaccgccaaggtggcggagaaagttgag
gactacgacatcctcggtaagtaccaaatgcctcgcttccccattcccgatgggcacacg
gcagtgacctatctccgtgaggtgacgctgcaggggttgcgtgaccgactggagctcaag
tccgacgatccaatcgctgaaaactatgccgaccggatgagccatgagcttgaaatcatg
gaacagatgggcttccccacctacttcctcgtggtttgggattacatccgttttgcgcga
gagcagaacatcccagtggggcctggtcgggggtctgcggcgggctccttggtggcctac
gccctagggatcaccaacatcgacccggtgagcaatggcttgctgtttgaacgattcctc
aatccagaacggaagtcgatgcctgacatcgacaccgatttttgtatcgagcgtcgctgt
gaagtcatcgattacgtcactgaacgctacggggacgacaaagttgcccagatcatcacg
ttcaaccggatgacatccaaggccgtcctcaaggatgtggcccgcgtgcttgatattccc
tatggagatgccgaccgcctcgccaagttgatccctgttgtgcggggtaaaccggccaaa
ttgaaggccatgatcggagatgagtcacccaatcccgagttccgtgagaaataccagggc
gaccctgtggtgaaacgctgggttgatatggccatgcggatcgaaggcaccaacaaaacc
tttggtgttcatgcggccggtgttgtgattgctgctgatccccttgatcaactcgtgccc
ctccagcgcaacaacgatggtcaggtcattactcaatacttcatggaagatgttgagtcg
atgggtttgctcaagatggattttcttgggctgaaaaacctcacaatgatcgacaagact
ctggaacttgttgaagttagtagtggtacacgcatcgaccccgacaagcttccgccccag
gatgccgatacatttgcgttgctcgctcgtggtgatttagagggaatttttcaacttgaa
tcgagtggcatgcgtcagatcgttcgagatctgaagccctcctcccttgaggatatttca
tcgattttggccctctatcggcctggcccactcgatgccggtttgattccaaaatttatt
aatcgaaagcatggccgcgaggcgattgatttcgcccacgagatccttgagccgattctg
agtgaaacctacggaatcatggtttatcaggaacagatcatgcggatcgcgcaggatcta
gcgggttattccttaggtcaagctgatcttctgcgtcgggcgatgggtaaaaagaaggta
tcggagatgcaaaaacaccgcggcatatttgtcgagggtgcgaagaagcgtggcgtcgat
gtgaaagtttccgatgaactctttgatcagatggttctctttgctgagtactgcttcaac
aagagccattccactgcctatggcgcggtgacctatcaaacggcatacctcaaggcccac
tacccagtggcctacatggcggctctgctcacggtgaatgctggcgctgccgacaaggtg
cagcgctacatctccaattgcaatgccatggggattgaggtgatgcctccagatttgaat
gcctcacttatcgacttcactcccaatggcgatcgaattttgttcggcttgtcggcggtt
cgaaatcttggggatggtgcgatccggcgtttgatcgaatcccgtgaaaatgatggtccg
ttccgctccttggcagatctgtgtgatcgcctgccatccagcgtcttgaatcgccgtggc
ttggaatccttaatccattgcggagcaatggatgccatggatccgaatgccaaccgggcg
cagttgatggcagatcttgatctgcttttggattgggcctcctctcgagcaaaggatcga
gatagtggccagggaaatctcttcgaccttatggctgcccctgcggaggacgatggtccg
acggatctcagcatggctccgaaggcggcgccagttccggactaccccccctctgaaaag
ctcagattggagaaagatcttgttggtttttatctttcagatcatccactgaaacagctc
actccttcatcgcgtttgttggcacccattggcttgggttccttagaggagcagccggat
aaagccaaggttagtgcgatcacgatgatcactgaattgcgtcaagtaaccacgcgaaaa
ggcgatcgaatggccattttgcaacttgaagatctcaccggtagctgtgaagcggttgtg
ttccccaagagttatgcccgattggccgaccatctgatggcagaagctcgcttgctcgtg
tgggctggcgtcgatcgacgcgatgaacgcgttcagttgatcattgacgactgtcgcgcc
attgatgacctcacattgctccttgttcagcttccctctgatcaggccaatgacatcgct
atccaacacaaattacgtgaatgtttgacgcaacatcgtcctgagcgcgatgagttaggc
gtgaaagttccagtagtggctgaggtttgtcttggagactcggtccgttatgtgcggctt
ggtgcacaattctgtgttcgagatcccatcgctgctgtgcaagcgttgaatgatcagtcg
tttacagcgcgttgtagtgatcggcttgtgttgggctga
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