Synechococcus sp. CC9902: Syncc9902_1407
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Entry
Syncc9902_1407 CDS
T00293
Name
(GenBank) DEAD/DEAH box helicase-like
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Syncc9902_1407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sye03019
]
Syncc9902_1407
03009 Ribosome biogenesis [BR:
sye03009
]
Syncc9902_1407
Enzymes [BR:
sye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Syncc9902_1407
Messenger RNA biogenesis [BR:
sye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Syncc9902_1407
Ribosome biogenesis [BR:
sye03009
]
Prokaryotic type
rRNA helicases
Syncc9902_1407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
B12-binding
DEDD_Tnp_IS110
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABB26371
LinkDB
All DBs
Position
complement(1370207..1372081)
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AA seq
624 aa
AA seq
DB search
MTEQQQQHEDPSCAVDLSASALPEDKKEVDQEEVLTTTIESSTAEPSTTEASTTEVTAEV
TADEAKSEPQSGFDGFGFSEALLKTLADKGYSDPSPIQKAAFPELMLGRDLVGQAQTGTG
KTAAFALPLLERLESGQKTPQVLVLAPTRELAMQVADSFKAYAAGHPHLKVLAVYGGTDF
RSQISTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLTSLVLDEADEMLRMGFIDDVEWILE
QLPKERQVVLFSATMPPEIRRLSKRYLNDPAEVTIKTKDQDGKLIRQRAITVPMSHKLEA
LQRVLDACGGEGVIIFARTKVITLTVAETLEAAGHQVAVLNGDVPQNQRERTVERLRSGS
VDVLVATDVAARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFMTPRERR
FIRNLERATGQPIEMMEVPGNTAINQGRLDRLRKRLSEAANGVAGNSEEGALIQELMQRV
ATELQLTPEQIALAALNLAIGPNGLLRKGDDDWIQNTQRMDRDRGDRGDRGERRERRIDR
PARAPEEDMQRYRVAVGHRDRVKPGNLVGAIAGETGLQGRSIGRIQIFDNHSLVDLPKGM
PEDIFNSLRTLRVMNRELQITQDS
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacagcagcagcagcacgaggatccctcgtgcgcagttgatctttccgcatct
gcattgccagaagacaaaaaagaagtcgaccaagaagaagttttaaccaccacaatcgag
tcatccaccgccgagccatccacaactgaggcgtccacaaccgaggtcacggcagaggtc
acggccgatgaggccaaatcagagcctcaatccggatttgacggttttggcttcagtgaa
gctctcctcaaaaccctcgcagacaagggctacagcgacccctcaccgatccaaaaggca
gcgtttccggaactgatgttgggccgcgaccttgtcggtcaggctcaaaccggtaccggt
aagacagcggcctttgcattgcctctgctggaacgtctggagagtggccagaagaccccc
caagtgttggtgctggctcccacaagggaattggcgatgcaggtggctgattccttcaag
gcctatgccgctggtcatccccacttaaaagttctggctgtctacggcggcacggatttc
cgctcccaaatcagcacgttgcgacggggcgttgatgtggtggtgggaacgccaggccgt
gtgatggatcacatgcgccagggcaccctcgacacatctgggctcacgagcttggtgctc
gatgaagccgatgagatgttgcgtatgggcttcatcgacgacgtggagtggatccttgag
cagctgcctaaggaacgacaggtggttttgttctcggcaacgatgcctcccgagattcgt
cgcttgtcaaagcgttatctcaacgatccagctgaagtcaccatcaaaaccaaagatcaa
gacggaaagctgattcggcaacgggcgatcaccgtgccgatgagccacaagcttgaggcc
ttgcaacgggtgttggatgcttgtgggggagagggtgtgatcatttttgctcgcaccaaa
gtgatcacgctgacggtggctgaaaccctggaggctgcagggcatcaggtggctgtttta
aacggcgatgttccccaaaaccaacgggaacgcaccgtggaacgcttgcgcagcggttct
gttgacgttttggtcgccacggacgtggcagcccgaggtttggatgtggagcggattggt
cttgtgatcaattacgacatgcccttcgatagcgaggcttatgtgcaccgcatcggtcgg
acaggtcgggcaggccgcaccggtgaagcggtgttgttcatgacgccgcgggaacgtcgg
tttattcgaaatctcgagagagcgactggtcaaccgatcgagatgatggaagtgcctggt
aatacggcaatcaaccagggtcgtttggatcgattgcggaaacgactcagtgaggcggcc
aatggtgttgcaggtaattccgaggaaggggcactcatccaagaactgatgcagcgggtg
gcgacggagctgcaactcacgccagaacaaattgctttggcggctctcaacctggccatt
ggtccgaatggcctgttgcgtaaaggtgatgacgactggattcagaacacccagcggatg
gaccgtgaccgtggtgatcgcggcgatcgtggggaacgccgtgaacgtcggatcgaccga
ccggcacgggctcctgaagaagacatgcagcgctaccgcgttgctgttggtcaccgtgat
cgggtgaaacccggcaatcttgtgggtgcaattgccggtgaaaccggtttacaaggccgc
tcaattggtcgaattcaaatctttgacaatcacagccttgtggatctcccaaagggcatg
ccagaggacattttcaatagtttgcgcacccttcgtgtgatgaatcgtgagttgcaaatc
acccaagattcttga
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