Synechococcus sp. CC9902: Syncc9902_1410
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Entry
Syncc9902_1410 CDS
T00293
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Syncc9902_1410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sye03400
]
Syncc9902_1410
Enzymes [BR:
sye01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Syncc9902_1410
DNA repair and recombination proteins [BR:
sye03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Syncc9902_1410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_22
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABB26374
UniProt:
Q3AX66
LinkDB
All DBs
Position
complement(1374118..1377744)
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AA seq
1208 aa
AA seq
DB search
MAERFDANTYPLKPGIRLLEASAGTGKTFALAHLTLRLITEAAYPLEALLVVTYTEAAAE
ELRSRIGQRLQQALVGLEQLENEMFPSAPDPVMAAWWEQCTASADRRIRIRRLLVALEQL
DRADIATIHGFCRRSLRRLALDNGAAIEPQLESDAAALQAEVVQYLWQQELLTLPDEQLQ
GLRQRGLSPQTFGAALARLDGDPNPRLAGDSTSVDRQSPLRDQLPCWIESLWHAFQSHWE
SDHAALESGFRAAAAQWKSQGCGSTSPYSAKPRTDRCAVINQWIAIQNGVPSLAAIASVE
KPLKEYFHPGSWCRMARKCGEDEPSLVASALQSAIGALWDEPLERVWRYLLERGLEELRE
RRGRRGAITFAGLLAAMDPGDGQVDWLAPLQERYRAVMVDEFQDTDPVQWRLLRRAFGDR
IHHLLLLVGDPKQAIYRFRGGDLGTYLEARQQVDRIDHLLDNFRATASLMDGLNTLMAPG
MPRSHLEIPAVRAQAVDQVSPTTAALQLLELELDTPASRTALEQQLPQHLAAVVFEILEG
PDQPDPSDLCVLVSRHQQATDLRRALGAAGIPSRLVTQGDVLESEAALVVQRLLDALADP
GDDRCLRLLVSSPLMNWSLEAMENEGGLDQLAEQLRLWERALPKLGLMGCLAQLLEGQRT
ADLSERGRMLGDLQQVGRLVQEAMHRQGLDSATAANWLRRERLHPTTPVPEARQPHSDQA
DQAVAVVTVHRSKGLEYPVVICPYLWQAPRQESGPLWRETGDGRWFIAIDSHWGKGHRAA
QQATDDAMAEAERLAYVAMTRARSQLMVVWVRSTGQEGAPLPCWLFGADAIHDSVDQFND
DRLDLALSERGVSLLRRVLPDPLLPSQRWRSLPSEQPLGLGETPGRIDRSWGRASYSAWI
SAPVDPVVHEQGRDPDPGAEECSLTGPELWPEQGPLADFPRGAVAGDCLHRILEQIPYQA
ADADDPSLLDSLRAAVIDSELRRAGLDCNLQSMVMEGLGYVLKTPLGGPLEQLQLSQLGL
KQRIHELSFDLPVGHVRTKDLVQAFHCSPNARFGGRYIDHLATLGVNSRGFLTGSIDLVF
CDPHQSRWWVLDWKSNWIGERRSEGSPGRCGPRHYHQDAMQEQMIHHHYPLQAHLYLVAL
HRHLSWRLPDYNPEQHLGGYVYVFLRGMPGDQLVSLEDSASVGPGRLVEPAPLERVLALD
RALSEVDR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacgctttgacgccaacacttatccccttaagcctggaatccgtctgttggaa
gccagtgcagggacgggcaaaaccttcgcgcttgcccatctcacccttcgattgatcacc
gaggcggcttacccgctggaagcactgctcgttgtgacttacaccgaagccgccgctgag
gaattgcgatctcggattggtcagcgtttgcagcaggcgctagttgggttggagcaactg
gagaacgaaatgtttccgtcggctcccgacccggtcatggccgcatggtgggagcaatgc
acggcgtctgcggatcgacgcatcagaattcgacggctgttggtggcactcgagcaactc
gaccgggctgacatcgccacgatccatgggttttgccgccgcagcctgcgccgtttagcc
ctcgataacggggctgcgatcgaacctcaactcgagagtgacgcggccgcacttcaggcc
gaggtggtgcaatacctctggcagcaggagctgttgacccttcccgatgagcagttgcaa
gggctacggcaacgggggttgtcgccgcaaacgttcggtgcggctttggcccgactggat
ggagatcccaacccccggctggccggcgattcgacaagtgttgatcgacaatcgccgctg
cgtgatcagctcccgtgctggatcgaaagcctttggcatgcgtttcaatcccactgggag
agtgatcatgccgccctggagtcgggttttcgagcggcagctgcgcagtggaaatcccag
ggttgtggctcaacatcgccctacagcgcgaagccacgcacggatcgctgcgctgtgatc
aaccaatggatcgcgatccaaaacggtgtgccgtccctggccgcgattgcctcggttgag
aaacccttgaaggagtatttccatcccggcagttggtgccggatggcccggaagtgcgga
gaggacgagcccagtttggtggcgtcggcactgcagtccgcaattggtgccctttgggat
gagccattggaacgggtatggcgatatttgctggagcgtggtcttgaggaattacgggag
cgtcgtggtcgtcgtggagcgatcactttcgctggattactcgcggcgatggatccgggt
gatggacaggtggattggctggcaccgcttcaggagcgctatcgcgcggtgatggtggat
gagttccaagacaccgatccggtgcagtggcgtttgctgcgacgggcctttggtgatcgc
attcaccatcttctgctgttggtgggcgatccaaagcaagcgatttatcgctttcgtggt
ggcgatctcggaacctatctagaggctcgccaacaggttgatcgcattgatcacttgctc
gataacttccgcgccaccgcatcgctgatggacgggttgaacacgttgatggcgccaggc
atgcctcgctctcacttggaaattcctgcggtgcgagctcaagccgttgatcaggtgtct
ccgacgacggccgcgctacagctgcttgagctggagctggatacgcctgcatcacgaacg
gcattggagcagcagttgccgcaacacctcgctgcggtggtgtttgaaattttggaaggc
cccgatcaacccgacccttctgatctgtgtgtgctggtcagtcgtcatcaacaggcgacg
gacctacgtcgggcccttggcgccgctggcattcccagtcggttggtcacccagggcgat
gtgttggaaagcgaagccgctctagtggtgcagcgcctgttggatgccctggcagatccc
ggtgatgatcgttgtttgcggctgttggtgagctccccgctcatgaattggtccttagag
gcgatggagaatgagggggggctcgatcagcttgctgagcagctgcggctttgggaacgc
gccttgcccaagctcggtttaatgggatgtttggcccaactcctggagggtcagcggact
gcggatttgtccgaacggggccgaatgttgggggacctgcagcaggtgggtcgattggtg
caggaggcaatgcatcggcagggattggacagtgcaacggcagcaaattggctgcgtcgc
gagcgcttgcatcccacaactccggtgccagaagcccgtcagccccacagcgaccaagcc
gatcaagccgtggctgtggtgactgtccatcgcagcaaagggctggagtatccagtggtg
atctgtccctatctctggcaagccccgcgccaagaaagtggaccgctctggcgggaaacg
ggtgatggtcgctggttcattgcgatcgattcccattggggaaagggacaccgtgctgcg
caacaagcgactgacgacgccatggcggaagcggaacggttggcctacgtcgcgatgacc
cgtgcccgctcccagttgatggtggtttgggtgcgttcaacgggacaagagggcgctcca
ctgccgtgttggctgtttggcgcggacgccatccatgattcggtggatcagttcaacgat
gaccgcctcgacttggccctgagcgagcggggtgtgtcgctgttgcgccgtgttttgccc
gatcccctgctcccatctcagcgttggcgatcactgccgagcgagcagccgctcggcctt
ggagaaacgcctggacgaatcgatcgcagctggggacgggcgagttactccgcctggatc
tcagcgcctgtggatcctgtcgtgcatgaacaaggtcgagaccctgaccccggagctgag
gagtgcagtctcactggaccggagctttggccagagcaagggccccttgccgatttcccg
aggggtgccgtggctggggattgcctgcatcggattcttgagcagatcccatatcaggcc
gcggatgccgacgacccttccctcttggacagtcttcgggcagctgtgatcgactcggaa
ctcaggcgggctgggttggattgcaacctgcaatcgatggtgatggaggggctgggttat
gtactcaaaactccccttggtggccccttagagcagttgcaactcagccagttggggctg
aagcaacgcatccatgaattgagctttgatctgccggtaggccatgtacgcaccaaggat
ctcgttcaagcctttcattgttctcccaacgcacggtttggagggcgatatatcgatcac
ctcgccacgttgggggtgaatagccgtggcttcctcaccggctcgatcgacctggtgttt
tgcgacccccatcagtcgcgctggtgggttttggattggaagagcaattggatcggggaa
cgtcgatcggagggcagccctggccgttgcggaccgcgtcactatcaccaggacgccatg
caagagcagatgattcaccatcactaccccttgcaagcccatctctacttagttgcctta
caccgacacctgagttggcgtctgccggattacaaccccgaacagcacctgggtggatat
gtctatgtcttcttaagagggatgcctggagatcagcttgtttcgcttgaggacagcgca
agtgtgggaccaggacgtctggtggaacctgcaccgttggagcgggtgttggccctggat
cgtgccttgtctgaggttgatcgatga
DBGET
integrated database retrieval system
