Synechococcus sp. CC9902: Syncc9902_1520
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Entry
Syncc9902_1520 CDS
T00293
Name
(GenBank) type II alternative RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
sye
Synechococcus sp. CC9902
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Syncc9902_1520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sye03021
]
Syncc9902_1520
Transcription machinery [BR:
sye03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Syncc9902_1520
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ABB26478
LinkDB
All DBs
Position
complement(1470572..1471513)
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AA seq
313 aa
AA seq
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MVSTASKPLETQRRRSSDPVSWYLSTIGRIPLLTAAEEIELGNQVQAMMAFTEDGSKDFK
VEDLTTKQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE
KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAM
PNRLEIAEAMDIPVEELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSADEPLDIVE
QRIHHEQLGRWLSHLSEQEQNVLRLRFGLEGNERHTLAEIGRMMEVSRERVRQVELKALR
KLRNLTRRLPSGI
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggtgtccacagcttctaagccgctcgagacgcagcgtcgccgtagtagcgatcctgtg
agttggtatttatcaacgatcggaaggatccctctgctgacggcggcagaggaaattgaa
ttggggaatcaagtgcaagccatgatggctttcacggaagatggttcgaaggacttcaaa
gttgaagacctaaccaccaaacagcggcgaatgctgcgtattggtcgtcgagctaaagaa
cgaatgatgaaggcgaaccttcgccttgtcgtcagcgttgccaagaaatatcagggcaaa
ggcctggagcttttggatttgatccaggaaggatcgcttggcttggaacgggctgttgaa
aaattcgatcccacccggggatacaagttttcgacctatgccttttggtggattcggcag
agcatgaccagggctattgcttgccagtcccgcacgatccgtctccctgttcatctgagc
gaacgactcaccacgattcgcaaagtcagtctggatttggcccacaagctcggcgccatg
cccaaccgcttggaaattgcggaagcgatggacatccctgtggaggaacttgattccctc
ttgcgtcaggccctcaccaccagcagcctcgatgctccggtgaatggagaagaaggacga
agcttccttggggacctaattgccgattcgtcagcggacgagcccctcgacatcgttgag
cagcgcattcatcacgagcaacttggccgttggctcagtcatctcagtgagcaagagcaa
aatgtgcttcggcttcgttttggcttagaaggcaacgagcgtcacacgcttgccgagatt
ggtcgaatgatggaagtgtcccgagagcgggtccgtcaggtggagctcaaggctcttcgt
aaattgcgcaatctcacccgacgtctgccaagcggaatttga
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