Synechococcus sp. CC9902: Syncc9902_1840
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Entry
Syncc9902_1840 CDS
T00293
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Syncc9902_1840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sye03019
]
Syncc9902_1840
03400 DNA repair and recombination proteins [BR:
sye03400
]
Syncc9902_1840
Enzymes [BR:
sye01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syncc9902_1840
Messenger RNA biogenesis [BR:
sye03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Syncc9902_1840
DNA repair and recombination proteins [BR:
sye03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Syncc9902_1840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SKI
Motif
Other DBs
NCBI-ProteinID:
ABB26797
UniProt:
Q3AWF9
LinkDB
All DBs
Position
complement(1767161..1768621)
Genome browser
AA seq
486 aa
AA seq
DB search
MQTHFGWDRFRAGQRAVVEAVLEGRDALAVLPTGGGKSLCYQLPALVRDGLVVVISPLVA
LMEDQVLALQKRGITAACLHAGLDPGRRQQAMARLRDESLRLLYIAPERLQGEATRQMLE
NHASEGRLVALAVDEAHCISAWGHDFRPDYRRLGMIRRLCPGVPMLALSATAAPRVRADI
LRLLDLRSPLVQVSSARRANLNYTMQRRPRDPMPQVLEALKQSRGAALIYARTRRSVELW
AERLREQKVDATPYHAGLDPDTRRTALTRFLEQKRPVLVATVAFGMGVDRGDVGLVLHLD
LPATPEGYLQESGRAGRDGQPASCLVLFSPGDRTTLSWAMQASGRSSPSLEERRRLDLAQ
QQLRRMEAVAEGEMCREQALLLAVGELVSPCGHCDRCKTAPNHRDWSTQVETLLTHLADQ
EGMDLRRLGEHLALHEPGRGDRWTWLARRLVQEELIRESNDGAQRLYLRESGRSFLKTPW
PLDYAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
ttgcagactcacttcgggtgggatcgctttcgagctggtcagcgtgccgttgttgaagcc
gtcttagaagggcgagatgcgttggcggtgttgccaacgggaggaggcaagtcgctttgc
tatcagctcccagcgttggtgcgtgatggcctagtggttgtgatttcgccgcttgtggcg
ctcatggaggaccaagtattggctctccagaaacgtgggatcacagctgcctgtctgcat
gcaggcctcgatccaggccgacggcagcaggccatggcgcgtttgcgggatgaatccctg
aggttgctctacatcgcgccggagcgcttgcagggagaagcgacgcgccaaatgttggaa
aaccatgcatctgaggggcgtctcgtggcattggccgtggatgaagcccattgcattagt
gcctggggtcacgatttccggcctgactacagacgtttgggaatgattcgtcgactctgc
ccaggtgtcccgatgctggccttaagtgccacggcggctccgagggtgcgggccgacatc
cttcgtttgctcgatctccgcagtcccttggtgcaggtgagctcggctcggcgcgccaac
ttgaactacacgatgcaacgtcgacccagggatccaatgccgcaggtactggaggccctt
aagcaatcccgaggggctgctttgatctatgcccggacacgccgttccgtcgagctctgg
gcagagcggctacgggagcagaaggttgatgccacgccgtaccacgctgggttggaccca
gacacccggcgaacggctctgacgcgtttcttggagcagaagcgcccggttcttgtggca
accgtggcttttggcatgggggtggatcgtggtgatgtaggcctcgtgctccatctcgat
ctaccggcgacccctgagggctatttgcaggaatccgggcgtgcaggacgcgacggacaa
cccgctagttgccttgtgttgttctctccaggcgatcgcacaacgttgagctgggcgatg
caggcttccgggcgctcgagtccctccttagaggagcgacgacgccttgatcttgctcag
cagcagctgcgacggatggaagctgtcgctgaaggcgagatgtgtcgtgagcaggctttg
ctgctggcggtaggggagcttgttagcccctgtggacattgcgaccgctgtaagaccgct
ccaaaccaccgtgattggtccacccaggttgaaacactgctaacgcaccttgccgaccag
gaggggatggatcttcgacgtttgggtgagcaccttgccctgcatgagcctggtcgtgga
gaccgttggacttggttggcacggcgacttgtgcaggaggaattaatccgtgagagcaac
gatggtgctcaacggctgtacctccgggagagcggtcgcagtttccttaaaactccatgg
ccactggattacgcggcatag
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