Synechococcus sp. CC9902: Syncc9902_1843
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Entry
Syncc9902_1843 CDS
T00293
Name
(GenBank) Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Syncc9902_1843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sye03400
]
Syncc9902_1843
Enzymes [BR:
sye01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Syncc9902_1843
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Syncc9902_1843
DNA repair and recombination proteins [BR:
sye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Syncc9902_1843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
PknG_rubred
Motif
Other DBs
NCBI-ProteinID:
ABB26800
UniProt:
Q3AWF6
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All DBs
Position
1770047..1770883
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AA seq
278 aa
AA seq
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MPELPEVETVRRGLADRLESFEIAEIEVCRARAIASPGGVDHFVAGLKGATVGAWSRRGK
YLMAQLEPNRGSWGVHLRMTGQFQWHATPAAPCSHTRVRFWNQHNEELRFVDLRSFGEMW
WIPEGDDLDSVMTGLKRLGPEPFSDAFTGAYLKQRLKGSARPIKTALLDQSLIAGVGNIY
ADESLFAAGIPPLSPSGKLTIEQLIRLRDELVNVLHISIGVGGTTFSDFRDLEGVNGNYG
GQSWVYRRSGQPCRKCGTPISREKLSGRSTHWCPSCQR
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgagctacctgaagttgagacggttcgccgaggattagcggaccgtcttgaatcg
tttgaaatcgctgaaatcgaagtctgccgtgcgagggcaatcgcgagtccgggcggagtc
gatcactttgtggcgggcctgaagggtgccacggttggagcctggtctcgccgaggcaaa
tacctcatggcacagctcgagcccaatcgaggtagctggggcgtgcatctgcgaatgacc
ggccaatttcaatggcatgccacgccagcagcaccatgcagtcacacgcgcgtgcgtttt
tggaatcaacacaacgaggaactgcggtttgttgacttgcgcagcttcggagaaatgtgg
tggataccagaaggcgacgacctcgacagcgtgatgaccggccttaaacgactggggcca
gaacccttcagcgatgcatttacgggtgcctatctcaagcaacggcttaagggttcagca
cgacccattaaaaccgcactgctggatcaatctctgattgccggagtaggaaacatctat
gccgatgagagcttgttcgcggccggaattccacctctctcaccatcggggaagctcacg
atcgaacaactgatccgactccgagatgaactggtcaacgtgctgcacatcagcatcggg
gttggaggaacaaccttcagcgactttcgagatcttgaaggcgtcaatgggaactatggg
gggcagtcgtgggtgtatcgccggagcggacagccttgccgcaagtgtggaacgcccatc
agccgtgaaaagttgtcgggccggagcacccactggtgcccgagctgtcagcgctaa
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