Synechococcus sp. CC9902: Syncc9902_1978
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Entry
Syncc9902_1978 CDS
T00293
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sye
Synechococcus sp. CC9902
Pathway
sye03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sye00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Syncc9902_1978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sye03021
]
Syncc9902_1978
03400 DNA repair and recombination proteins [BR:
sye03400
]
Syncc9902_1978
Enzymes [BR:
sye01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Syncc9902_1978
Transcription machinery [BR:
sye03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Syncc9902_1978
DNA repair and recombination proteins [BR:
sye03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Syncc9902_1978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABB26936
UniProt:
Q3AW70
LinkDB
All DBs
Position
1881366..1882304
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AA seq
312 aa
AA seq
DB search
MLQYQIDRIEHQIAEDRAQTGVFLIGPLERGQATTLGNALRRVLMGGLEGSAVTAIRIAG
VNHEYATVPGVREDVLDILLNCKELSVNSRSAELEIGRLVVAGPAEVKASDLQFSSQVQV
IDGNRTIATVADGHSLELEVHVERGIGYRPVDRHNEDTSAIDLLQIDAVFMPVKRVNFNI
DETAVAEGGSARERLRIEISTDGSITPDDALAQTANQLLELFQPLATVTLVEEVGVEPEP
SAEAQIPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALER
IGISIPQSRTSA
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcagtaccagatcgatcgcatcgagcatcaaatcgccgaggatcgcgcccaaaca
ggcgtcttcctgatcggtccactcgagcgtggccaagccacaaccttgggcaatgctttg
cgccgtgtcctgatgggcggccttgaaggcagcgccgtcaccgcaattcgcattgccggc
gttaaccacgagtacgccacagtccctggggttcgtgaagacgtcctcgacattctgctg
aactgcaaagagctgtctgttaacagccgttcagcggaactcgagattggtcgtctggtg
gtcgctggtcctgctgaagtaaaggccagcgatcttcagttttcatctcaagttcaagtt
atcgatggcaatcgcaccatcgcaaccgtcgcagacggacacagcctggaattggaagtt
cacgtcgagcgtggcatcggctatcgcccagtcgaccgacacaacgaagacaccagtgcc
attgatcttctacagatcgatgcggtgtttatgccggtgaagcgagtcaatttcaatatt
gatgaaacagccgttgcagaaggcggttcagcccgcgaacgcctacggattgagatcagc
accgatggctccattactcctgacgacgccctggctcagacggccaatcaactgctcgag
ctcttccaacctctagcgaccgtcaccctcgtagaagaagtgggtgtcgagccggaacca
tctgcagaggcacagattcctctcgaggaattgaacctctcggttcgggcttacaactgc
ctcaagcgtgcccaggtcaactccgtgtctgacctcatgggcttcagctatgaggatctc
ctcgaaatcaagaacttcggttctaaatccgccgacgaagtgatcgaagccctcgagcgc
atcggcatctctatcccccaaagccgcacctcggcataa
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