Synechococcus elongatus PCC 7942 = FACHB-805: Synpcc7942_1301
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Entry
Synpcc7942_1301 CDS
T00300
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syf
Synechococcus elongatus PCC 7942 = FACHB-805
Pathway
syf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Synpcc7942_1301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syf03019
]
Synpcc7942_1301
03400 DNA repair and recombination proteins [BR:
syf03400
]
Synpcc7942_1301
Enzymes [BR:
syf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Synpcc7942_1301
Messenger RNA biogenesis [BR:
syf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Synpcc7942_1301
DNA repair and recombination proteins [BR:
syf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Synpcc7942_1301
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HEM4
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABB57331
UniProt:
Q31NN8
LinkDB
All DBs
Position
1328678..1330141
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AA seq
487 aa
AA seq
DB search
MASGNAGDTACLPAMVQAASLTAQQLLQQHWGYPAFRPGQAEIVEAIAQGRDCLIIWPTG
GGKSLCFQVPALLRSGLTIVVTPLIALIENQVADLQARGIAAACLHSQMAPRDRKAVLQK
LPQLKLLYLAPETLLSTPLWSRLTEPTIAIAGLILDEAHCLLQWGESFRPTYLRLGAIRP
ALVRLGKPSFPIAAFTATAYPQEVARLSQILQLQQPQRHQRDPYRSNLVLAVKTVWTPRQ
RQNQLLDFLAKHQGQSGLIYLRSRRDCETWADRLRNRGYRCAAYHAGVSDRERRQIEQAW
QTGSLPFAVCSSAFGMGIDKRDVRWVAHVHPPLLLSEYLQEVGRGGRDQQRAQGLTLVSE
PSGWLDPSDRDRWQGFQQATQQQWEAAQRQAQQLPASGDLRSLASSNELDLALAYLQRLG
QLQWLDPFRYRRRAIPTPRPAPRLDLQPLRQFLYSRDCRWRSLLQSFGSNHPTTWRCGHC
DRCQTTG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtggctagcgggaatgctggagacactgcttgtttgccggctatggttcaggccgcatca
ctcaccgcgcaacaactgcttcagcagcattggggttaccccgcctttcgaccgggacag
gctgagattgtagaggcgatcgctcaaggtcgagattgtctgatcatctggccaaccggc
ggtggcaaatcgctctgcttccaagtgccagcacttctgcgatcggggttgacgatcgtg
gtgacgccgctgattgccctgattgaaaatcaagtggcggacctacaagcacggggaatt
gctgccgcctgcctccatagccagatggctccacgcgatcgcaaggccgtgcttcagaag
ttaccgcaactcaagctgctctatctggcgcccgaaaccttactgagtacgcctctctgg
tcgcgtctgacggagccaacgattgcgatcgcaggactcatcctcgacgaagcccactgt
ctgctgcagtggggcgaaagtttccgaccgacctacctgcggctaggtgcgatccgacct
gctctcgtccgattgggtaaaccttccttcccgatcgcagctttcacagcgaccgcttac
ccccaagaggtggcacgactcagccagatactacaactgcaacaacctcaacgacatcag
cgcgatccctatcgcagcaatcttgtcctagccgtgaagacggtgtggacgcctcgccag
cgtcagaatcagctcttagactttttagccaaacatcaaggtcagagtggcttaatctat
ctgcgcagccggcgcgactgtgaaacctgggccgaccgcttgcgcaatcgaggctaccgc
tgcgcggcttatcatgccggagtgagcgatcgcgaacggcggcaaattgagcaagcttgg
caaactggttcgctgccctttgcagtctgtagctctgcctttgggatgggcattgataag
cgcgatgtacgctgggttgcccatgtacacccccctttgctcctcagtgaatatctgcaa
gaagtcggccgtggtggacgtgatcaacaacgggcccaaggcctgaccttagtgagtgag
cccagtggttggctcgatccgagcgatcgcgatcgctggcaaggatttcagcaggctacc
cagcaacaatgggaagcggcccaacggcaagcccagcaacttcccgccagtggcgatctt
cgcagcctagccagtagtaatgaactggatttagccttggcctacctgcaaagactgggg
cagttgcagtggctggatcccttccggtatcggcggcgagccatacccactccacgccca
gcaccccggctggatctacaacccctgcggcagttcctctacagtcgcgactgccgttgg
cgatcgctgttgcaatccttcgggagcaatcaccccacaacttggcgctgtggacactgc
gatcgctgccaaaccactggctga
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