Synechococcus elongatus PCC 7942 = FACHB-805: Synpcc7942_1886
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Entry
Synpcc7942_1886 CDS
T00300
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
syf
Synechococcus elongatus PCC 7942 = FACHB-805
Pathway
syf03410
Base excision repair
syf03430
Mismatch repair
syf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Synpcc7942_1886
03430 Mismatch repair
Synpcc7942_1886
03440 Homologous recombination
Synpcc7942_1886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syf03400
]
Synpcc7942_1886
DNA repair and recombination proteins [BR:
syf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Synpcc7942_1886
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Synpcc7942_1886
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Synpcc7942_1886
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2459
Toprim
Motif
Other DBs
NCBI-ProteinID:
ABB57916
UniProt:
Q31M03
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All DBs
Position
1957417..1959471
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AA seq
684 aa
AA seq
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MSLPTIEKRIGTEVLISLPAQAATPLPEQRWILAPSSSQATVLATALNLPPVLAQVLINR
GLGAIADARDYLKPEQQELPDPREEFEDLVESVLLLEKAIRSGDRIAICGDYDADGMTST
ALLLRTFRQLGAKAEYAIPSRMQEGYGINERIVEEFAASGVRVVLTVDNGIAAYQPIARA
RELGLTVIVTDHHDLPPELPPANAILNPKLLPEESPYHGLAGVGVAYVLALCVAEQFNRQ
AELIRPLLELYTLGTIADLAPLTGVNRRWLQRGLRLLPQSQLVGVQALMEAAGVKTSDRS
LKPEDIGFKLGPRINAIGRIGDPQVVIELLTTEDRDRAQELAGICEVTNQERRGLCDRIT
EEAIAIVEAEGFDNRQTAVLVLAQPNWHHGVIGIVASRLVERYGVPVFISSYEEDGHLRG
SARGTPEFDVFAALEHCRDVLGRFGGHRAAGGFSLSAENLSAWRSRLEAFAADCLPVDCR
RPAIQIDAELPIALASLNLFEQQQQLQPFGIANDEPLYWAKNLAILDQRRMGNGQEHLKL
TLSDGQSKVTAVYWRWGDRPVPEDRVDVAYYLRENIWNDRRELQLEIAGIRLSQELDSIT
FLYGDRTYQLTTETIANSTIWRLTNAEGSILRIDCNRQQAKIQKSGQDWQAIDLDHPYLQ
GLMAQAKQILNSIQGRTQVQANLF
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
ttgagtctccctacaattgagaagcgaattggaaccgaggtcttgatcagtctaccggcc
caagcggcgacccctttgcccgagcagcgttggatccttgcacctagcagttctcaagca
acggtgctggcaactgcgctcaatctgccgcccgtattggcgcaagtgctgatcaaccga
gggctcggtgcgatcgctgacgcaagggattacctgaagccagagcagcaagaattaccg
gatcctcgcgaggaatttgaagacctcgtcgagagcgtgctgctgcttgagaaagcgatt
cgcagcggcgatcgcattgccatctgcggcgactacgatgccgatggtatgaccagtact
gccttactactgcgcacctttcgccagttgggagccaaggcagagtacgccattcctagc
cggatgcaggaaggctacggcattaacgagcggattgtcgaagagtttgcggcttctggc
gtccgagtggtgctgaccgtcgataacggcattgccgcctatcaaccgatcgctcgagcc
cgcgagttggggctgacggtgattgttaccgatcaccacgatctcccaccagaattgccg
cctgctaacgccattcttaatcccaaacttctcccggaagagtcgccttatcacggacta
gcgggtgtcggtgttgcttacgtgttagcactctgtgtggcggagcagttcaatcgccaa
gcagaactgattcgcccgctactagagctctataccctcggcacgatcgccgatctcgct
ccgctcacgggggtgaatcgccgctggctccagcgtggactccggctcttgcctcagtcc
caactggtgggtgtgcaagccctcatggaggcggcaggcgtcaagaccagcgatcgcagc
cttaaacctgaggatattggctttaagctcggccctcggatcaatgcgatcggtcgaatt
ggcgatccgcaggtggtgattgagctgctgaccaccgaagaccgcgatcgcgcccaagaa
ttggctgggatttgcgaggtgaccaaccaagagcggcgcgggctctgcgatcggattaca
gaggaagcgatcgcaatcgttgaggcagagggctttgataatcgccagactgcggtactg
gtcttggcacagcccaattggcatcatggcgtgattggcattgtggcctcccgcttggtg
gagcgttacggggtacccgtgttcatttctagctacgaagaggacgggcatctgcggggg
tccgcccgaggcacccctgaatttgacgtctttgctgcgctggaacattgccgcgatgta
ctcggtcgctttggcgggcatcgagctgctggtggcttttcgttgtcggctgagaatctc
tcagcttggcgatcgcgcctggaagcctttgcagctgactgtttaccggtggactgtcgg
cgtccagccatccagattgatgcagaattgccgatcgctctggcaagcctgaacttgttt
gagcagcaacagcagctccagccttttggcattgccaatgatgagccgctctactgggcc
aaaaatttggccattctcgatcagcgccggatgggcaacggtcaagagcatctcaagctg
acgttgagcgacggacagtccaaggtgacagctgtctactggcggtggggcgatcgcccc
gttcccgaggatcgagtggatgtcgcctattacctgcgcgaaaacatctggaacgatcgt
cgcgaactccaactggaaattgctggcattcgtttgagccaagagttagattcgatcact
tttttatatggcgatcgcacctatcaactcaccactgaaactattgccaactcaacaatt
tggcgattaacaaacgcagaaggatcgattctcagaattgattgcaatcgccagcaagca
aagattcagaagtctgggcaagattggcaagcgattgacttagaccatccctatctacaa
ggcttaatggcacaagctaagcagatcctgaactcaattcaaggaagaacgcaagttcaa
gcgaatcttttttga
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