Synechococcus elongatus PCC7942: Synpcc7942_1911
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Entry
Synpcc7942_1911 CDS
T00300
Name
(GenBank) Cold shock protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
syf
Synechococcus elongatus PCC7942
Pathway
syf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Synpcc7942_1911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syf03019
]
Synpcc7942_1911
03016 Transfer RNA biogenesis [BR:
syf03016
]
Synpcc7942_1911
Enzymes [BR:
syf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Synpcc7942_1911
Messenger RNA biogenesis [BR:
syf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Synpcc7942_1911
Transfer RNA biogenesis [BR:
syf03016
]
Prokaryotic type
tRNA degradation factors
Synpcc7942_1911
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
ABB57941
UniProt:
Q31LX8
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All DBs
Position
complement(1986376..1988613)
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AA seq
745 aa
AA seq
DB search
MNFSIATLLTQFSEGKFVAPKQLEKKLGCEDEDKSRKLQIILDALERLGLLTKDRGKYRR
NEENEWVEARLRCSSKGFCFAIQDAEDAEDIYIREHQLNHAWNGDRVLVNVLREGSRRRS
PEGEVKLILERANSSVLARITEKAEGEGFRAVPLDDRLLCELDLESNGLDLAANRDHLAS
VAVQRYPLAQLPPVGKVTQILGSDPESASPVDLIRCKHNLPADWSEAAIAALTDLAQTAD
ANAIQGRLDLRSVFTVAIAADDSRPLDVALSLQPGESGGWQVMVHTVEVAPYLPLQSDLD
LEAQRHGIDLRLGETALPFLPPVLTQGVGRFAVGEDRRAVSLLIRVDATGAVQDYELQPS
LVQLDQVLSPAEATDLLADSKAKGEGIKALKELQTIADLWRTQRRERGGFELTVTPAIGN
DEGALGVISRSPAIAGAVQEILIQANRLVTEHLQALELPVLYVGQRSPDLGSIQDAQRLA
AGLGLAIEVDENETELNRLALQQLSDATQTSELASLLDHLLLQTFKPSFYSTLAVPHFSL
GLETYGHFVAPSQRYADLWLQRVILALFQQGRDRRSSRSKEGVNIRHSSSHGQINWSVLP
PEVQTELETDLKLLAQQLSEAEKRATEASADYQGLQKAAAAKACIGQTFAGVIRGVQSYG
FFVQIEALQVEGLVHVSSLKDDWYEYRSRQQRLIGRKNRRQFGLGDRVEVEIRNVDYYRQ
QIDLGVLPLPEAQSETSDREPLEML
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgaacttctcgattgccacgcttctgactcagttcagtgaaggaaagtttgttgcccca
aaacagctggaaaaaaaactgggctgtgaggacgaggacaagagccgcaaattgcagatt
atcttggacgctttggagcgtttagggctgttgaccaaagaccgaggcaaataccggcgc
aacgaagaaaacgagtgggtagaggcgcggttgcgttgctcgagcaaaggcttttgcttt
gctattcaagacgctgaagatgcggaggatatttacatccgcgagcatcagctcaatcat
gcctggaatggcgatcgcgttttggtgaacgtgctgcgtgagggcagtcgccgtcgcagt
ccggaaggggaagtcaagctgattctggaacgggcaaacagcagcgtcttggcacgaatt
actgaaaaagctgaaggcgagggcttccgagccgtcccgctcgacgatcgcctactctgt
gaacttgatttagagagtaacggccttgatttagccgccaatcgtgatcacctggcgagt
gtggcggttcagcgctatcccttggcgcaactgccccccgtcggtaaagtaacccagatt
ttgggcagtgaccccgagtctgcttcaccagtcgacctaattcgttgtaagcacaacctg
ccggccgactggagtgaagcggcgatcgcagcgctgacggatttggctcaaacggcggat
gccaatgccattcaaggtcgcttggatttgcggtctgtatttacggtggcgatcgcagcg
gatgattcccgcccgctcgacgttgccctgagcctgcagccgggagaatctggtggatgg
caagtgatggttcacaccgttgaggtggctccttatctgccgctgcagtctgatttggat
cttgaagcccagcggcacgggattgatctgcgtttgggcgagacggccttgcccttcctg
ccgcccgtgctgactcaaggggtgggtcgctttgctgtgggcgaggatcggcgcgccgtt
tccttgctgatccgcgtcgatgcgacgggagctgttcaggactatgaactgcaacccagt
ttggtgcagctcgatcaggtgctgtctccggctgaggcaacagatttactggctgacagc
aaagcaaagggtgaaggaatcaaagcccttaaagagctgcagacgatcgctgatctgtgg
cgaacccaacggcgggaacggggcggttttgaactgacggtgacgccggcgatcggcaat
gacgagggggcgttgggcgttatctcgcgatcgcccgcgatcgctggagcagtccaagaa
attctgattcaggccaatcgtctggtcacggaacatctgcaagccttggagctgccagtg
ctctacgttgggcagcgatcgcccgacctcggcagcattcaagatgcccagcggctggca
gcgggtttgggcctggcgatcgaagttgatgagaatgagaccgaactgaatcgcttggcg
ctgcagcagttgagtgatgcgacccagacttccgagctggccagcttgcttgaccatctg
ctgctgcaaacctttaagccgagcttctacagtactctggccgtgccccacttcagcctc
ggcctagaaacctatggccattttgttgccccaagccagcgctatgccgacctctggttg
cagcgggtgatcttggcactattccaacagggtcgcgatcgccgctctagccgcagcaaa
gagggcgtcaacattcgtcacagcagcagccacggccagatcaactggagcgtgctgcca
ccggaggtgcagacagaactcgaaacggatctgaaactcctagcgcagcagctcagcgaa
gccgaaaaacgggctaccgaagccagtgcagactaccaagggctccagaaggcggccgcc
gccaaggcctgcattggtcagactttcgctggggtgattcggggcgttcaatcctacggc
ttctttgttcagatcgaagccttgcaggttgagggactggttcacgtcagctcgctcaag
gacgactggtacgaataccgatcgcgccagcagcggttgattggccgcaagaatcgtcgt
cagtttggtttgggcgatcgcgttgaggtggaaattcgcaacgtcgattactaccgccag
caaattgaccttggggtgctgcccttgccggaagcgcagtcggaaacctccgatcgcgaa
cccttggagatgctgtga
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