Synechococcus sp. CC9311: sync_0414
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Entry
sync_0414 CDS
T00390
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
syg
Synechococcus sp. CC9311
Pathway
syg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
sync_0414 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syg03021
]
sync_0414 (rpoA)
03400 DNA repair and recombination proteins [BR:
syg03400
]
sync_0414 (rpoA)
Enzymes [BR:
syg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
sync_0414 (rpoA)
Transcription machinery [BR:
syg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
sync_0414 (rpoA)
DNA repair and recombination proteins [BR:
syg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
sync_0414 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABI47852
UniProt:
Q0ID28
LinkDB
All DBs
Position
complement(423039..423977)
Genome browser
AA seq
312 aa
AA seq
DB search
MLQYQIDRIEHQITDDRSQTGVFLIGPLERGQATTLGNSLRRMLMGNLAGTAVTAVRIAG
VNHEYATIPGVREDVLDILLNCKQLTVTSRTDELEIGRLIVSGPAVVKAKDLQFSSQVQV
VDGERPIATVSEGHSLELEVHVERGVGYRPVDRHNEDTSAIDLLQIDAVFMPVHRVNFTT
DETAVAEGGSARERLRMEVVTDGSMTPDDAIAQAANQLIELFQPLATVTMVEEPGIEPEP
SAEAQIPLEELNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALER
IGISIPQSRTSV
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcaataccagatcgatcgtatcgagcatcagatcacagatgatcgctcccagacc
ggtgtctttctcatcggccccctggagcgtggtcaagcaaccactctcgggaattccctc
cgaaggatgctcatgggcaacctcgcgggaacagctgtcactgctgtccgcattgctgga
gtgaatcacgagtacgccaccattccaggtgtgcgcgaagacgtgcttgacattcttctc
aactgcaagcagctcactgttaccagtcgtacagacgagctggaaatcggtcgtctgatc
gtctctgggcctgcagtagtcaaagccaaggatctccaattctcatcacaggtccaagtg
gtggatggtgagcgtccgattgccactgtgagcgagggacacagcctcgagcttgaagtc
catgttgaacggggcgttggttaccgccctgttgatcgccacaacgaagacacgagtgca
attgatctgctgcagatcgatgctgtgtttatgcctgttcaccgagtgaatttcacgacg
gatgaaacagcagttgcggagggaggatcggcccgcgaacgactccgcatggaagttgtg
accgatgggtcaatgaccccggatgatgcgattgcacaggctgctaatcagctcattgag
ctattccagcccttagctaccgtcaccatggtagaagaaccaggcatagaacctgagcct
tccgctgaagctcaaatcccactcgaagagcttaatctttctgtccgggcttacaactgt
cttaagcgcgcacaggtgaattcagtctctgacctgatgggtttcagttacgaagatctt
ctcgagatcaaaaactttggctcgaagtcagctgatgaagtgatcgaagctctcgagcgc
atcggcatttcgatcccccaaagtcgcaccagcgtctga
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