Synechococcus sp. CC9311: sync_0564
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Entry
sync_0564 CDS
T00390
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syg
Synechococcus sp. CC9311
Pathway
syg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sync_0564 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syg03019
]
sync_0564 (recQ)
03400 DNA repair and recombination proteins [BR:
syg03400
]
sync_0564 (recQ)
Enzymes [BR:
syg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
sync_0564 (recQ)
Messenger RNA biogenesis [BR:
syg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
sync_0564 (recQ)
DNA repair and recombination proteins [BR:
syg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
sync_0564 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
SKI
Hpr_kinase_N
Motif
Other DBs
NCBI-ProteinID:
ABI46197
UniProt:
Q0ICN8
LinkDB
All DBs
Position
539398..540888
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AA seq
496 aa
AA seq
DB search
MDSLLEALHRHYGWDSFRSGQRPVIEALLSGRDCLAVLPTGGGKSLCFQLPALVRQGLVV
VISPLVALMDDQVLQLQRRGIAAACLHRGIQPEQRRLIQTQLSAGSLRLLYLAPERLQGE
AARDMLSAYARDGRLVALAVDEAHCISAWGHDFRPDYRRLGQLRALCPGVPLVALSATAA
PRVRADILRLLGLCKPLIQVSSAQRTNLKYTMRRRPSDPLPDVLEALQDSRGATLIYART
RRSVELWAERLQAQGIPAITYHAGLEPERREEALMHFLEADAPVLVATVAFGMGVDRPDV
GLVLHLDLPATPEGYLQESGRAGRDGRPAHCLVLFSPGDRTSLGWAMQSTLRRASESKVS
DDDVWRVEFSQQQLRRMEAVAEGEICREQALLLSVGELTSPCGRCDRCLAQVRPKDWSDR
AQELLEVIDAGQGADIRSLTERLRELDGSEERWGWLARRLVQEELIRESNDGAQRLSLRD
SGRQFLHAPWPLHYAA
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
ttggattcactccttgaggctctccacaggcattacggctgggactcctttcgttcagga
caacgtcctgtcatcgaagcactgctgagcggtcgcgactgcttagcagtgctgccaacc
ggaggcggaaaatcgctttgttttcagcttcctgccttggtgcggcaggggctggtcgtg
gtgatatctccactcgttgctctgatggatgatcaggttttgcaactgcagcggaggggg
attgctgctgcctgcctgcaccgcgggattcaacctgaacaacgacgtttgattcagaca
cagttatcggctggcagcttgcgtctcctttatctcgcccctgagcgtcttcaaggtgag
gcggcgagggacatgctctctgcctatgcaagggatgggcggctggtggcattggccgtg
gatgaggctcattgcatcagcgcttgggggcatgattttcggcccgactacaggcgcctt
ggtcagcttcgcgccctttgccccggtgtcccgctcgttgcgttgagtgcaaccgcagct
ccaagggtgcgggctgacatcctccgtctacttgggttatgtaaaccgctcatccaggtg
tcgtcggcgcaacgcaccaacctcaaatacacaatgcggcgccgtccgagcgatccgctc
cctgatgtcttagaggccctgcaggattcacggggtgccaccttgatctatgccaggacc
cgtcgttcggtggagctctgggctgaacggctacaagcccaaggcattccagctatcacg
tatcacgctgggctggagccggaacgccgtgaagaggctttaatgcattttttagaagct
gatgcgcctgttttggtggccaccgtggcgtttgggatgggcgttgaccgtccggatgtg
gggttggtcttgcacttggatttgcctgcgacaccagagggatatctccaggagtcaggt
cgcgctggacgcgatggcagaccggcccattgtcttgtgttgttttcacctggagaccga
accagcttgggctgggcgatgcagtccacgttgcgccgtgcgtctgaatccaaggtgtct
gacgatgatgtttggcgcgtggagttttctcagcagcaattgaggcgaatggaggctgtt
gctgagggtgagatttgccgagaacaggctctgctgctttcagtgggcgagctgacgtct
ccttgcggccgctgtgatcgctgcctggctcaagtgcggcccaaggattggtcggatcgc
gcccaagaattgttggaggtgatcgatgccggtcagggagcagacatccgcagcctgacc
gagcgattacgggagcttgatggcagcgaagagcgttggggttggcttgcgcgcaggctc
gtgcaagaggagctcattcgtgagagcaacgatggtgcccaacgcttgtcgttaagggat
agcggcagacaattcctgcatgccccttggcccttgcattacgcagcttga
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