Synechococcus sp. CC9311: sync_1051
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Entry
sync_1051 CDS
T00390
Symbol
deaD
Name
(GenBank) Superfamily II DNA/RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syg
Synechococcus sp. CC9311
Pathway
syg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sync_1051 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syg03019
]
sync_1051 (deaD)
03009 Ribosome biogenesis [BR:
syg03009
]
sync_1051 (deaD)
Enzymes [BR:
syg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
sync_1051 (deaD)
Messenger RNA biogenesis [BR:
syg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
sync_1051 (deaD)
Ribosome biogenesis [BR:
syg03009
]
Prokaryotic type
rRNA helicases
sync_1051 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
Cas3-like_C_2
B12-binding
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABI46354
UniProt:
Q0IBA9
LinkDB
All DBs
Position
complement(955391..957196)
Genome browser
AA seq
601 aa
AA seq
DB search
MTNTPAQDSGSCSVDLSMSEISETTASETTDEMFTTVIETVEEPKVPSGFSEFGFSEALL
KTLADKGYKEPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLLERLQGDSPLPSVL
VLAPTRELAMQVAEAFKAYSAGHPHLNVLAIYGGSDFRSQINALRRGVDVVVGTPGRVMD
HMRQGTLNTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPNEIRRLS
KRYLREPAEITIKTKDKEARRIRHRCITMQNSHKLEALNRVLEAVTGEGVIIFARTKAIT
LTVAESLEAAGHDVAVLNGDVPQNQRERTVERLRKGTVNILVATDVAARGLDVDRIGLVI
NYDMPFDSEAYVHRIGRTGRAGRSGDAILFITPRERRFVGNLERAVGQAIEPMDIPSNAE
INQSRLDRLRTRLSTEATSEDKPEEETALLQELIQRVAQELEVEPGQLTLAAMRLAVGEG
PLLVQGDESWLKAPLRNDRRDDRRGDRGNDRGRRPERASRPPEDDMERFRVEVGHRDRVK
PGNLVGAIANESGLEGRMIGRIQIFETHSLVDLPKGMPENVFNSLRRLKVMNRELQIRQD
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatacaccagctcaggactcagggtcctgttcagtggatctcagcatgtctgag
atttccgagaccaccgcatcggagaccactgatgagatgtttacaacagtgattgaaacc
gttgaagagccgaaagtcccctctggattttcggagttcggattcagtgaggcactcctc
aaaacacttgctgataagggatacaaagaaccgtcacccatccaaaaggcggccatcccg
gagctgatgctcggacgcgatctggtaggccaagctcaaacaggaaccggaaaaacagcc
gccttcgccctgcctttgctggagagattgcaaggcgacagcccactcccaagcgtgctg
gtgttggcgccgacccgtgaactcgcgatgcaagtggcggaagcgttcaaggcctattcc
gcgggtcatccccacctcaatgtgctggcgatctatggagggtctgatttccgctcccaa
atcaatgctttgagacgtggtgttgacgttgtcgtggggactcctggtcgcgtcatggat
cacatgcgccaaggaaccctcaatacaagcggattgcgcagcctcgtccttgacgaggcc
gatgagatgcttcgcatgggcttcatcgacgatgtcgaatggatcctcgagcaactacct
caagaacgtcaggtcgtgctgttttcagcgacgatgccgaacgaaatacgcaggctctcc
aagcgctacctgcgtgaacctgcagagatcacgatcaaaacgaaggacaaggaagcgcgt
cggatccgccatcgctgcatcaccatgcagaactctcacaagctcgaggcactcaaccga
gtgcttgaagctgtgacgggcgaaggggtgattatttttgcccgaaccaaggcaatcaca
ctcacggttgcggaatccctagaagccgcaggtcacgacgtggctgttctcaacggagat
gtgccccaaaaccaacgggagcgcaccgtagaaaggcttcggaaaggaaccgtcaacatt
ctggtggccaccgatgtagcagctcgtggtctcgatgttgaccgcatcggtctcgtcatc
aactacgacatgccgtttgatagtgaggcttacgtccatcgcatcggtcgtacaggcagg
gctggacgcagtggcgacgccatcctgttcatcacacccagggaacgcaggttcgtcggt
aatctcgaacgcgccgtgggacaggccattgagccgatggacatccctagcaatgccgaa
atcaaccaaagtcgacttgatcgtcttcgcacccgcctcagcactgaagccaccagcgaa
gacaaaccagaggaagagactgcactgcttcaagagctcatccaaagagtggcccaagag
cttgaggtagagccaggtcaactcactttggccgcaatgaggttggccgtaggtgaaggc
cctctcctggtacaaggcgatgaaagctggctgaaagctcctttgcgcaacgaccgcaga
gatgatcgacgcggagatcgaggtaatgatcgcggcagacgaccagagcgtgcatcacgc
cctccagaagatgacatggaacggttcagggttgaagtcggtcatcgcgatcgcgtcaaa
cccggcaacctcgttggagcgattgccaacgaatcaggattggaaggacgcatgattggt
cgcattcagatctttgaaacgcacagccttgtagaccttcccaaaggaatgccagagaac
gtttttaattctcttcgtcgtctcaaagtgatgaatcgagagcttcaaatccgccaggac
tcctaa
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