Synechococcus sp. CC9311: sync_1263
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Entry
sync_1263 CDS
T00390
Name
(GenBank) Type II alternative RNA polymerase sigma factor, sigma-70 family protein
KO
K03086
RNA polymerase primary sigma factor
Organism
syg
Synechococcus sp. CC9311
Brite
KEGG Orthology (KO) [BR:
syg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
sync_1263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syg03021
]
sync_1263
Transcription machinery [BR:
syg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
sync_1263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Sigma70_r4_2
HTH_23
HTH_29
DUF134
HTH_10
KORA
UPF0122
YcbB
Motif
Other DBs
NCBI-ProteinID:
ABI47450
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All DBs
Position
1141656..1142504
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AA seq
282 aa
AA seq
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MPFPDNGNIDQFLDEIGRTPLLTAAEEITLGTSVRMSQSPEATPAQKRAGKRAKDRMIKA
NLRLVVTVSRKYLHRQLGQLEFGDLVQEGSIGLNRAVEKFDPELGYKFSTYAYWWIRQSI
SRAIDQTSATIRVPTSMNLVLAKLNQLPQGLNDEQICELLEVSDTQLKNLRHAFVAKRIA
SLDMKLGADRDGSTLTELLCDEQSTLNYDEFQWEAVKRSLGDQAKIALNNDQELLRRNVV
DEQSLQSIANEIGISRERVRQKVDRAKKHLATIMIEHRDLVA
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcccagataacggcaacattgatcagttcttggatgagattggccgaactcca
ttgctcacagcagctgaggagatcacgcttggaacttcagtgaggatgagccagtcaccc
gaggcaactcctgctcaaaaaagggctggcaaacgagctaaagatcgaatgattaaggcc
aatcttcggttggtcgtcaccgttagccgcaagtacctgcatcgtcaacttgggcaattg
gaatttggtgatctggttcaggaaggtagcattggcctgaaccgtgcagttgagaagttt
gatcctgaactgggatacaaattcagcacctatgcgtattggtggatccgccaatcaata
agtagggcaattgatcagacatctgcgacgatcagggttccaacttctatgaatcttgtg
ctagcaaagctcaatcaactgccgcagggattaaatgatgagcagatttgcgagctacta
gaggttagtgatactcagctaaaaaaccttcggcacgcttttgttgccaaaagaattgca
tcgctagatatgaagcttggtgcagatagggatggttcaacccttactgaacttctttgc
gatgagcaatcaacacttaactatgatgagttccagtgggaagcagttaagcgaagcctt
ggggatcaagcaaaaatagctctgaataacgatcaagagttgttgcgtcgcaacgttgtg
gatgagcagagccttcagtcaatcgccaacgaaattggaattagtcgcgaacgagtccgt
cagaaggttgatcgagccaaaaagcacctagccaccataatgatcgagcacagggatctc
gtggcctga
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