Synechococcus sp. CC9311: sync_1300
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Entry
sync_1300 CDS
T00390
Name
(GenBank) DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
syg
Synechococcus sp. CC9311
Pathway
syg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
sync_1300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syg03019
]
sync_1300
Enzymes [BR:
syg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
sync_1300
Messenger RNA biogenesis [BR:
syg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
sync_1300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABI47028
UniProt:
Q0IAL4
LinkDB
All DBs
Position
1180418..1181698
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AA seq
426 aa
AA seq
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MAISPSPVPSESATSGFDSLGLSQPLLKALQEKGYTAPSPIQLQAIPAVISGRDVMAAAQ
TGTGKTAGFTLPMLERLNHGARPGRLQIRALVLTPTRELAAQVLASVREYSKYLQLTSDV
VFGGVKINPQIQRLQKGVDVLVATPGRLLDLLQQGAVRFDRVEFLVLDEADRMLDMGFIH
DIRRVISRLPDRRQTLMFSATFSAPIRKLATGLLDHPVQIQVAPANQTVRSVEQVVHPCD
MARKVDLLSHLIRSGEWLQVLVFSRTKHGANRVVDRLSQQGLLAAAIHGNKSQGARTRAL
QGFKDGSVRVLVATDIAARGIDIQQLPHVVNLDLPNVAEDYVHRIGRTGRAGETGHAISL
VAAEEALLLKAIERLTGESLRRENVPGFEPTVLSAPPLDLSGGRGRRSGGSSRSRKDTRS
TRTYRR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
ttggccatttccccttcccctgtcccgtcggagtccgcaacctctggttttgattccctt
ggtttgagtcagccgctgctgaaggctttgcaggagaagggatacaccgctccgtcgccg
attcaattgcaggccatccccgctgtgatttctgggcgggatgtgatggctgctgcgcaa
acaggaacaggtaaaacggcagggttcacgctcccgatgttggaacgtctcaaccatgga
gcacgtccagggcgtttacagatacgggctttggtcctgaccccgactcgagagctggcc
gcacaggtgttggcaagtgttcgcgagtacagcaagtatctccagctcactagtgatgtg
gtgtttggtggtgtgaagatcaaccctcaaattcagcgtctgcagaagggcgttgatgtg
ttggttgccactccaggtcgcttgctagatctgctccaacagggtgctgtgcggttcgat
cgggttgagtttttggtgcttgatgaagccgatcgaatgttggatatgggctttattcat
gacatccggcgggtgatttctcgtcttcctgatcgtcgtcagaccttgatgttttcggcc
acatttagtgcgccaattcggaaattagcgacagggttgcttgaccatcctgtgcaaatt
caggtcgcccctgccaaccaaactgtgcgatctgtggagcaggttgttcatccttgcgat
atggcccgcaaagttgatcttttgagtcatctcattcgcagcggtgagtggcttcaggtg
ttggtgttctcccggacaaaacacggtgcgaatcgcgtcgtggatcgtctcagccagcaa
ggtctgttagcggcagcaatccatggaaataaaagccaaggtgcacgaacacgggctttg
caaggattcaaggatggatcggtgcgcgttcttgttgccacagatattgctgctcgaggg
attgatattcagcagctccctcatgtggtgaatctcgatctcccgaatgttgccgaagac
tatgtgcatcgcatcggacgcacgggtcgtgcaggagaaaccggccatgccatctctctt
gttgctgctgaagaggcattgcttttgaaggcgattgagcgcctcacaggtgagtccttg
cgtcgggaaaatgttcctgggtttgaacccaccgttctgagtgctcctcccctcgaccta
agcggtggacgcggtcgccgctcaggtggttcgtcgcgcagccgcaaagacactcgtagc
acgaggacgtatcgtcgctaa
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