Synechococcus sp. CC9311: sync_1336
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Entry
sync_1336 CDS
T00390
Name
(GenBank) exoribonuclease, VacB/RNB family protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syg
Synechococcus sp. CC9311
Brite
KEGG Orthology (KO) [BR:
syg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syg03016
]
sync_1336
Enzymes [BR:
syg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
sync_1336
Transfer RNA biogenesis [BR:
syg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
sync_1336
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABI45280
UniProt:
Q0IAH9
LinkDB
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Position
complement(1214483..1216420)
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AA seq
645 aa
AA seq
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MKLGFDRKPVVLPQRQLDLICPLPSGAELPDGLGASPWNLKAEQVNPDCLDRRSWGSAWV
LLLETDETVEIDFFSDLVCGGTSPSQLALCWLALMGPQLWFRYKQNQIKARSAAELKPLR
RQHRLKVLEQQKEQRWKQLLSTRKQVDLASLPQSLCDRFEQLKDLVSGSIEFAQLDRPIQ
QSLMGLRLDQDRAELRLLLVDLGLWDPHQLASMAGTTWSSGFSPALLEEAERLVELNASE
CPGDSERIDLCHQRCVTIDDEDTRDIDDGIALERREDGSQRLWIHIADPGRLIESDSALD
LEARRRGSSLYLAKGNLPMFPESLSTGPFSLRARTRTAAWSIWAELTSEGELGDHGIHRS
WVQPTYRLSYDDADELIELAPPEDTDLAELDALLSRRRDFRVRNGALLMDLPEGRIRCRD
GQPSLEVSEPGRARQMVAEAMILAGAVVARFAEVHDLALPFRSQLPADLPPSSELEALPD
GAVRFAAIKRCLSRGLMGTQPAAHFSLGLASYAQATSPIRRYGDLVVQRQLQAQLSGEDP
LDRDVLQTLISDFDAAVREGIGISREDQRHWQQVWFETHRKQEWAAQFLRWLRPQDQLGL
VRIDDLAMDVAAECPRDAEPGESMLVRVHHVDSVRDQLRLVASAH
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
ttgaaactcgggttcgatcgcaagcccgttgttttgccccagcggcaattggatcttatt
tgccccctgccatccggagctgagcttcccgatggactgggggcttctccatggaacctg
aaagccgaacaagtcaatcctgactgtctcgaccgtcgcagctggggctcagcatgggtc
ttgcttttagagactgatgagaccgttgagattgactttttcagcgatctggtttgcgga
ggaaccagtccaagccaattagcgctctgttggctggccttgatgggcccgcaactgtgg
ttccgttacaagcaaaatcagatcaaggcgcgctcagcggcagaactcaaaccgttgcgc
cgacaacaccggctcaaagttcttgaacagcaaaaggaacaacgctggaaacagctgttg
agcacccgcaaacaggtggacctggcaagtctcccccaatccctatgcgacaggttcgag
cagctcaaggacttggtttcaggttccatcgaattcgcacaacttgaccggcctattcag
cagagcctgatgggtctacgtcttgatcaagacagagctgagcttcgacttctcttggtg
gatctcggcctttgggaccctcatcaactggcatcgatggccggcacaacctggtcatca
ggtttcagcccagctttactcgaagaggctgaacggttggtggagctcaatgcaagcgaa
tgccctggtgactccgagcgcatcgatctttgccatcaacgctgcgtcacgatcgatgat
gaagacacgcgagatattgatgacgggatagcgctggaacgtcgcgaggatggctcgcaa
agactatggatacacatcgctgaccccggtcggctgatcgagtcagactcagccctcgat
ctggaagcgaggcgtcgcggtagcagcctttatttggcgaaaggcaatctgccgatgttt
ccagaatccctatccacggggcctttcagtttgcgagcacggactcgaacagctgcctgg
agcatctgggccgaactgaccagcgaaggcgagctcggagatcacggaatccatcgcagc
tgggtccaacccacttatcgactcagttacgacgatgccgatgagttgatcgaattggca
cccccagaagacaccgacttggcggagttagatgcgctcttaagccgaaggcgagacttc
cgagtccgcaatggagccctgctcatggatctgccagaaggccggatccgttgtcgagat
ggtcaaccgtctctcgaggtcagtgaacctggtcgagcaaggcagatggtggccgaagcc
atgattttggctggtgcagtggtggctcgttttgcggaagtgcatgacctggccttaccg
ttccgcagccagcttccagctgacctcccccccagttccgaattggaggcactcccagat
ggggccgttcgattcgccgccatcaagcgctgtctcagtcgcggactgatgggaacgcaa
cctgccgcccacttcagtttgggacttgcctcctacgcccaagccacctcccccattcgc
cgctatggcgatcttgttgtacagaggcaactgcaagcacaactcagtggagaagatccg
cttgatcgcgatgtccttcaaaccctgatcagtgatttcgatgcagcggtacgtgaaggc
attggtatttccagagaagaccaacggcactggcagcaggtttggtttgaaacccatcgc
aagcaggagtgggctgctcagttcttgcgctggttgcgccctcaggatcagctgggactc
gtgcgaattgacgacctagccatggatgtggcggctgaatgcccaagagatgcagaacca
ggggaaagcatgctcgtgagggtgcatcatgttgactcggtgcgtgatcaactcagactg
gtggcctcagcccactaa
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