Synechococcus sp. WH 8109: Syncc8109_0179
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Entry
Syncc8109_0179 CDS
T03783
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
syh
Synechococcus sp. WH 8109
Pathway
syh03420
Nucleotide excision repair
syh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Syncc8109_0179 (pcrA)
03430 Mismatch repair
Syncc8109_0179 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syh03400
]
Syncc8109_0179 (pcrA)
Enzymes [BR:
syh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Syncc8109_0179 (pcrA)
DNA repair and recombination proteins [BR:
syh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Syncc8109_0179 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
Syncc8109_0179 (pcrA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
DEAD
NPHP3_N
ResIII
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AHF62597
LinkDB
All DBs
Position
168231..170615
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AA seq
794 aa
AA seq
DB search
MSFLDGLNDAQRRAVDHYQGPLLVVAGAGSGKTRALTHRIAHLIGEHGVDPAQILAVTFT
NKAAREMKERLELLLAQKLAQSQYGQPWSTLPAVEQRQSRSRIYREVTKELWIGTFHALF
ARMLRYDIDKFQDSEGLTWTKQFSIYDEADAQSLVKEIVTQELQLDPKRFDPKKTRWAIS
NAKNQGWLPDQFEANAEGQRGKLTADVYRRYRKALAANNALDFDDLLLLPVQLLQQNEQV
RSYWHRRFRHVLVDEYQDTNRTQYDLIKLLVTDGQEPQDYDDWAGRSVFVVGDADQSIYS
FRAADFTILMGFQDDFGDQAPDEATRTMVKLEKNYRSTATILEAANALISHNSERIDKVL
LPTRGEGELISLTRCDDEIAEAEAVVHRLRTMEAANPELSWGDMAVLYRTNAQSRAIEES
LVRWGIPYIVVGGLRFYDRREIKDLLAYLRLLINPADTVSLLRVINVPKRGIGKTTIQRL
TDAANQLGIPLWDVVSDPEAVRSLGGRSAKGLLQFCDLVNDLQLRSHEVTPSELIQQVME
KSGYVSELIADGTDEAEERRRNLQELVNAALQYQEENEEGDLEGFLASAALASDADSKDT
AADRVTLMTLHSSKGLEFPVVCLVGLEQGLFPSYRSLDDPASLEEERRLCYVGITRAKER
LFLSHVSERRLWGGMREAAVPSVFLSELPEALVQGDIPQSCGVALRRERRLERLTRVDRD
KPLSAPANAVRRRQAGPAPGRSWQVGDQLMHASFGVGEITHTFGSGEKVSIAVKFAGMGP
KILDPRLAPIEPVG
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcttggatggcctcaacgatgcccagcgcagggcggtggatcactaccaaggt
cctctgttggtggttgccggcgccggtagcggcaagacccgggccctcacccatcgcatt
gctcacctgattggggagcacggtgtagatccagcgcagattctggccgtcacattcacc
aacaaggccgctcgcgaaatgaaggagcggcttgagctgctcttggcccagaagctggcg
cagagtcagtacggccagccctggagcactctgccggcggtggagcagcgtcagtcgcgt
tcgcgcatctaccgcgaagtcaccaaagaactctggatcggcaccttccacgccttattt
gcgcggatgctccgctacgacatcgacaaattccaggactccgaaggactcacctggacc
aagcagttttcgatctacgacgaagctgatgcccagagcttggtcaaggagatcgtcact
caggaactgcagctggatcccaaacgctttgaccccaagaagacccgttgggcgatcagc
aacgccaaaaaccagggatggctgcccgaccagtttgaggccaacgccgaagggcagcgg
ggcaagctcaccgccgatgtctaccggcgttaccgcaaggcattggcggcaaacaatgcc
ctcgactttgacgatttgctgcttctcccggtgcagctcttgcagcaaaacgagcaggtg
cgcagctactggcaccgtcgtttccgtcacgttctggtggatgagtatcaggacaccaac
cgcacccagtacgacctgatcaagctgttggtgaccgatggccaggaaccgcaggattac
gacgactgggcagggcgttcggtgtttgtggtgggtgacgccgaccagagcatttacagc
ttccgggctgcagatttcacaatcctgatgggctttcaggacgatttcggtgatcaggct
ccggatgaggccacgcgcacgatggtgaagctggaaaagaattaccgctccaccgccacc
atccttgaggccgccaatgcgctgatttcccacaacagcgaacggatcgacaaagtgttg
ctccccacgcgtggtgagggggaattgatctctctcacccgctgtgatgacgaaatcgct
gaggcggaggctgtggtgcaccggttgcgcacgatggaggcggccaatcccgagctcagc
tggggtgacatggctgtgctttatcgcaccaatgcccagtcccgtgcgatcgaggaatcg
ctggtgcgctggggcatcccttacatcgttgtggggggactgcgcttctacgaccggcgt
gagatcaaagatcttctggcctatctgcggctgctgatcaaccctgcggacaccgtcagt
ctgctgcgggtgatcaatgtgcccaagcgcggcataggcaagaccacgatccagcggctc
accgatgcggccaatcaattgggcattccgctctgggatgtggtgagtgaccctgaagcg
gtgcgttccttgggtggtcgttccgccaaggggctgctgcagttctgcgatctggtgaac
gatctccagttgcgcagtcatgaggtgactccctcggaactgattcagcaggtgatggag
aaaagcggttatgtcagcgagttgatcgctgatggcaccgatgaggccgaggaacggcgt
cgcaacctgcaggaattggtgaacgccgctcttcagtaccaggaggagaacgaggagggt
gatctggagggattcctggccagtgcagcactggccagtgatgccgacagcaaagacacc
gccgcggatcgtgtcaccttgatgacgctgcatagcagcaaggggttggagtttcctgtg
gtctgcctggtgggtttggagcagggactgttccccagctatcgctccctcgacgatccg
gcatcactggaggaggaacgacgtctttgctacgtgggcatcacccgggcgaaggagcgt
ttgttcctctcccatgtcagtgagcggcgtctttggggtgggatgcgcgaggcggcggtt
ccgtcggtgtttctttcggagctgccggaggccctggtgcagggggacattccccagagt
tgtggagtagcgcttcggcgtgagcggcgcctggaacggctcacccgcgtggatcgcgac
aaaccgttatcggctccagcgaatgcggtgcggcgacgtcaggcagggccagctcccggt
cggagctggcaggtgggtgaccagttgatgcatgccagcttcggtgttggggagatcacc
cataccttcggtagtggtgagaaggtctcaattgcggtcaagtttgcagggatgggcccc
aagatcctggatccgcgcctcgccccaatcgagcctgttggttga
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