Synechococcus sp. WH 8109: Syncc8109_0420
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Entry
Syncc8109_0420 CDS
T03783
Symbol
rnd
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
syh
Synechococcus sp. WH 8109
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syh03016
]
Syncc8109_0420 (rnd)
Enzymes [BR:
syh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Syncc8109_0420 (rnd)
Transfer RNA biogenesis [BR:
syh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Syncc8109_0420 (rnd)
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Gene cluster
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Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
AHF62823
UniProt:
W0GUX5
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All DBs
Position
376239..376883
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AA seq
214 aa
AA seq
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MAEKSSSPAEFAVFDRDLDAAWTERYLQSPRLAVDTEAMGLIHGRDRLCLVQIADAEDRV
ACVRIGLGQTEAPNLKRLLEAPTVEKVFHFARFDVAALAAGLGIEVNPVFCTKVGSRLGR
TYTPRHGLKDLVMELVGVELDKGAQSSDWGRVDELTDAQLAYAANDVRYLLPARERLEKM
LRREGRWDLAQRCFQCVPVVAELDRLRFHQIFEH
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaagtcgtcatccccagcggaattcgccgtctttgatcgcgatctcgatgca
gcttggacggagcgctacctgcagtccccgcggcttgctgttgacaccgaagcgatgggg
ctgatccatgggcgtgatcggctttgcctggttcagatcgccgacgccgaggaccgtgtg
gcctgcgtccgcattggcctgggccagaccgaggcaccgaatctcaagcgcctgcttgag
gcgcccacggtggagaaggtgtttcacttcgcccgtttcgatgtggctgcgcttgccgcc
ggtttggggatcgaagtgaaccccgtgttctgcaccaaggtcggcagtcggctcggccgc
acatacaccccccgccatggcctcaaggatctggtgatggaattggtcggcgttgagctg
gacaagggcgcccagagcagtgactggggccgggtggacgaactcacggatgctcagctg
gcctatgccgccaacgatgtgcgctacttgcttccagcccgcgagcgcctggagaagatg
ttgcggcgggaaggacgctgggatctagcacaacgctgctttcaatgcgttccggtggtt
gccgagctggatcggctgcgctttcaccagatctttgagcactga
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