Synechococcus sp. WH 8109: Syncc8109_1326
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Entry
Syncc8109_1326 CDS
T03783
Name
(GenBank) putative ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syh
Synechococcus sp. WH 8109
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syh03016
]
Syncc8109_1326
Enzymes [BR:
syh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Syncc8109_1326
Transfer RNA biogenesis [BR:
syh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Syncc8109_1326
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AHF63690
UniProt:
W0GU29
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All DBs
Position
994997..997027
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AA seq
676 aa
AA seq
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MNNSIQLGDTVAVVLKGSPLFGRLLSIKGSKAVLSFGGQRRDQGLPLRDLIHIDPEHRFV
NSDLPAPERVQDSAPSARAVVEAWQLLETDQPGGLARLSLCELGELVLTPFNLAGLAALW
AWLHGNQQLFRWRRDRLIQPLSREERASLRRQRRAERQAQQHEQRQLALLRTERALSDDE
RVELDPVWDERFSHWIQLLKDNPAAVGFDPDLKQWSAELSIGSDAADLRQWLIVRGFLDP
NEPIGLRGSVWSRSFTSDLVEEANRLVALSNEELPGDEQRIDLTHLATYSLDDSGTREID
DALSLERRDGVDWIWIHIADPSRLIDIDSPLDHEARRRATSLYLAEGVMPMLPLELAAGP
LSLRAGQRCAALSVAVCLDDDGAVAEQRIARSWIRPRYGLTYTDGDELIELAPPGDEALS
DLSGLLMLRMRWRRSKGAVMFDQPEGRFRYSDGALTLQVIDPSPSRLMVSEAMLLMGAVV
ASFGQEHSLPLPFRSQPAAELPSIDELDRIPEGPARDAAIKRCLSRGVQGTRAMPHFSLG
LEAYVQATSPIRRYADLVAHRQIIAQLSALAPMDEERLSEVIDDLDDPLRQSIQISREDQ
RHWQQVWFAEHQNTVWSAVFLRWLRPQDRLALVHVSELAIDLVGCVSAEDPAPGDGLELK
VGRADPVRGELQLQLA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaactcaatccaactcggagacaccgtcgcggtagttctcaagggttcccctctt
ttcggccgtcttctgtccatcaagggcagcaaggcggttctttcttttggtggtcaacgt
cgtgaccagggcctgcccctgcgcgacttgattcatattgatcccgaacatcgctttgtt
aacagtgaccttcctgcacctgagcgggtgcaggacagcgctccatcggcacgggctgtt
gttgaggcttggcagctgttggaaacggatcaaccggggggattggctcgactgagcctc
tgtgagctgggcgagttggtattgaccccgttcaacctcgctgggctggctgcgctgtgg
gcctggctgcatgggaaccaacagttgttccgctggcgtcgtgaccgtttgatccagcca
ctctcccgcgaagagagagccagcctgcgtcgccaacgccgagctgagcggcaggcacag
cagcatgaacaacgacagctcgcgttgctgcggactgagcgagcccttagcgacgatgaa
cgcgtggagctggatccggtatgggacgagcgcttcagccactggattcagttgctgaaa
gacaatcccgctgcggtgggtttcgaccctgatctcaagcagtggtcggcagagttgtcg
attggatcggatgccgccgatctgcggcagtggttgatcgtgcgtgggtttctcgatccc
aatgagcccattggcctgaggggcagcgtctggtctcgcagttttacctctgatctggtg
gaggaagcgaatcgtcttgttgctctgtcgaatgaagagctacccggggatgagcaacgc
atagacctcactcacctggccacctacagcctggacgattcgggcactcgagaaattgat
gacgcgctctcgctggagcgtcgtgatggcgtcgattggatctggatccacatcgctgat
ccaagtcgtctgatcgacattgactccccccttgatcatgaagccagacgtcgggccacc
agtttgtatctggcggagggtgtgatgcccatgctccctctggagctggcggccggtccc
ctcagtctgcgggctggccagcgttgtgcagccctgagtgtggccgtttgccttgatgac
gatggtgccgtggcggaacaacggattgcgcgcagctggatccgaccccgctacggcctc
acctacaccgatggtgatgagctgatcgagttggcacccccaggagatgaagccctctcg
gatctctcgggactcttgatgttgcgcatgcgctggcgccgctccaaaggagccgtgatg
tttgaccagcctgaaggacgcttccgctacagcgatggggccttgacgcttcaggtgatt
gacccttcaccctcccgcctgatggtgagtgaagcgatgctgctgatgggggctgttgtg
gcctcctttgggcaagagcacagcctgccgttgcccttccgcagtcagcctgcggctgag
ctgccctccatcgatgaactcgatcgaatccccgagggaccagcccgtgatgcggcgatc
aagcgctgcttgagccgaggcgtgcagggcacgcgagccatgccccatttcagtctcggg
cttgaggcctatgtgcaggcgacttctccgattcgacgctacgccgatctcgtcgcccac
cggcaaatcattgcccagctctctgcgcttgcaccgatggatgaagagcgtctgagtgaa
gtgattgacgatctcgatgatccattgcgccaatccattcagatcagccgtgaggatcag
cgccactggcagcaggtgtggttcgccgagcatcagaacaccgtttggtctgccgtattc
ctgcgctggctgcgcccgcaggatcgcttggccctggttcatgtgagcgagctggccatt
gatctggtcggttgtgtttctgcagaagaccctgctcctggcgacggtcttgaactcaag
gtggggcgtgctgacccggtacgcggtgagctgcagcttcagttggcttga
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