Synechococcus sp. WH 8109: Syncc8109_1347
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Entry
Syncc8109_1347 CDS
T03783
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
syh
Synechococcus sp. WH 8109
Pathway
syh03410
Base excision repair
syh03430
Mismatch repair
syh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Syncc8109_1347 (recJ)
03430 Mismatch repair
Syncc8109_1347 (recJ)
03440 Homologous recombination
Syncc8109_1347 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syh03400
]
Syncc8109_1347 (recJ)
DNA repair and recombination proteins [BR:
syh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Syncc8109_1347 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Syncc8109_1347 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Syncc8109_1347 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AHF63710
UniProt:
W0GU45
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All DBs
Position
1014840..1016738
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AA seq
632 aa
AA seq
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MPAVPLHWSWSLPAVVEPSPLRGLDLPLSLRCLLRRRGFSSTSEAESFLFPGDLPPTRDH
FPDLEQACTRLVTACRSRERVAICGDYDADGMTSTALLLRALAPLGAEPEPAIPSRMEEG
YGLNPVMVQRLYDDGVRLLVTVDNGVAAREALELAASLSMQVIVTDHHTIPAERPPMTAL
IHPATTPEGSPYRGLAGVGLAYVLAHAVADVLNKPEAIRVARDLFCIGTVADMAPLVGAN
RSWLLEGLNHLHRSECKGVQALQRLAGLGERPLTAEDIGFQLAPRINAVGRLGEPRLVVD
LLTAEDPDSAMALARRCDDYNRQRRDLCDAIEAEAVALVEAESSDALPSFLLLAQSHWHH
GVIGIVAARLMERYHRPTALLAGDGDGSLRASVRGPIGFAVDRALSKCSDLLTRFGGHPA
AGGFTVKAEFVHALHERLCAEADGWLMTQAQGRPVQPDALLQLKDVNWDLWRHLQSLAPF
GIGHPKPLFWSRRVSVEDRRDLKGGHLALTLRQGESERRAIAWRWDPSAAVPACCDVAYS
ISINRWQGEQRLQLELKAIRAHTELVLIDRGTRQYTAQLTKTSGLKLTNGEGVTLQASIQ
QEQSLTSDNDLARDQRVIQLIEEACLGLGLRP
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
ttgccggctgttccgctccactggtcctggtcccttccagccgtggtggaaccatcgcca
ttgcgaggacttgatttgccgctgtcgctgcgatgcttgctgcggcgtaggggattcagc
tcaacatccgaggccgagagctttctctttcctggtgatctgccacccacacgcgatcat
ttccccgatctcgagcaggcctgtacgcgcttggtaacggcctgccgatcccgtgaacgc
gtcgccatctgtggtgattacgacgctgatgggatgaccagcacagcgttgttactgcgg
gcattggccccattgggtgctgagccggaacccgccattccctcgcggatggaggaggga
tatggcctcaatcccgtcatggtgcagcggctctacgacgatggcgtgcgactgctggtc
accgttgataacggtgttgccgcgagggaagccctcgaactggccgcaagtttgtccatg
caggtgatcgtgaccgatcaccacacgatcccggcggaacggccgcccatgaccgcgctc
attcacccggccaccaccccggagggctcgccttaccgcggactcgccggtgtggggctg
gcctatgtgctggcccatgctgttgccgatgtgctgaacaaaccagaagccatccgcgtt
gcacgcgatctgttctgcatcggcacggttgccgatatggctcctttggtaggggccaac
cgcagttggttgctggaggggctgaaccacctgcatcgttctgagtgcaagggggtgcaa
gcgcttcagcgcctggcgggtctcggggaacgtccgctgacggcagaagacatcggtttt
cagcttgcaccaagaatcaatgcagtgggccgccttggggaacctaggcttgtggtggat
ctgctcacggctgaggatcccgattcagcgatggccctcgcacgccgttgtgatgattac
aaccgccagcgacgggatctctgcgacgcgattgaagcggaggccgtggctctggtggaa
gcggagtccagtgacgctctcccctcattcctgttgttggcgcaaagccactggcaccac
ggagtgattggcattgttgctgcgcggctgatggagcgctatcaccgccccaccgctctt
ctggccggtgatggagatggaagcctgcgggcttcggtacgaggacccatcggtttcgcg
gtggatcgtgccctctctaaatgcagtgatctactgacccgctttggaggccatcccgct
gccgggggattcactgtcaaagcggagtttgtgcatgccctgcatgagcgcctctgcgcc
gaagccgatgggtggttgatgacccaggcccaggggcgtcccgtgcaacccgacgctctc
ctgcagttgaaggatgtgaactgggatctgtggcgccacttgcaatccctggcccccttc
ggcatcggtcatcccaaacctctgttctggtcacgacgggtgagcgttgaggatcggcgc
gacctcaaaggaggacacctggccctaacgctgcgccagggtgagagtgagcgtcgcgcc
atcgcctggcgatgggatccatcggcggctgttcccgcatgctgtgacgtggcttacagc
atttcgatcaaccgttggcagggtgagcagcggctgcagctggagctcaaggccatccgt
gcccatacggagttggtgttgatcgaccgcggcacacgccagtacaccgcccagttgacg
aaaacctcagggctgaagctcaccaatggcgagggtgtgacgcttcaggcaagcattcaa
caagaacaatccctcaccagcgacaacgacctggcgagggatcagcgggtgattcagttg
atcgaagaagcctgcctgggattaggactacgtccttaa
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