Synechococcus sp. WH 8109: Syncc8109_1353
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Entry
Syncc8109_1353 CDS
T03783
Symbol
zam
Name
(GenBank) RNA binding S1
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
syh
Synechococcus sp. WH 8109
Pathway
syh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Syncc8109_1353 (zam)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syh03019
]
Syncc8109_1353 (zam)
03016 Transfer RNA biogenesis [BR:
syh03016
]
Syncc8109_1353 (zam)
Enzymes [BR:
syh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Syncc8109_1353 (zam)
Messenger RNA biogenesis [BR:
syh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Syncc8109_1353 (zam)
Transfer RNA biogenesis [BR:
syh03016
]
Prokaryotic type
tRNA degradation factors
Syncc8109_1353 (zam)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
RNase_II_C_S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AHF63716
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All DBs
Position
1018082..1020403
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AA seq
773 aa
AA seq
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MKFTVADLLDQLSTEHPSEPDQLAKILKLSNKTDKAALELAVSLLMKIGVIQKTSEGGLT
RPQESDLIDARLRCSSKGFCFAIRDDGGEDIYVRDHQLNHAWNGDRVLVRVTREGGRRRS
PEGGVQCILERATQSLLAQVEQQSDQLLASPLDERVLAGIELPTEDSKYLPGDEVSSVVE
VRIDRYPVAQHPAAGHVVRSLPLNGGPAADRDLLLTKAGLQDRPVAPRSSGKTPASKGRV
DLTAQQSLLLKGWSQDDAPGLPAVHVETKDGGCRLWVHAPSVGERIGLGNSLDACLRDRG
EALCLGEVWQPLLTPSLQKATSFSAGSEADAISVRLDVSANGEVSDWEFMLSTVRPVAEV
SADQLVALADRKPKARSVPTALKPIKDQLGQLETLRFCSTLLLEQERANGIVQLDLCPPQ
LEALGDLCSADPSGLRHRWVDAFNPVDPHAFLQPLLRAADRAWTAQRLELQLPGITIEAD
EPDGSVLTDVAKTAIALDLPLELDDDGCPSASELIQVFKDSSQRRVLEQQLSHALPPLTL
VASTEVPPAAADSDGDEVAASSQNTSLTPWTCATQHYTHLVNQQMIVALLTDAKDRPTVR
HKTRLKLGLKGAGADLTWPLFTASQDEKLNGLVNERTVQRLNTRRRQVLELEKDLLSMIQ
ARSAQPLIGEQVEGRISGVQSYGFFVEVGESRVEGLVHVSSLNDDWYEYRSRQNRLVGRK
NRQTYQLGDAVQVRVINVDVLRNQIDLEVISQGANGSTEPESSEPLPVALSER
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttacggttgccgatctgctggatcagctctctacggagcatccctctgagccc
gaccaactggccaagatcctcaagctcagcaacaagacggataaagcggcgcttgagctt
gccgtttcattactgatgaaaatcggtgttatccagaagacgagtgagggtggacttact
cgcccccaagagagtgatctgattgatgctcgcctgcgttgcagcagcaaaggcttctgc
ttcgccattcgcgatgacggcggcgaagacatctatgtacgtgaccatcagctgaaccac
gcctggaatggcgatcgtgtgctggtgcgggtgacgcgggaaggcggacgccgccgctct
ccagaaggaggcgtgcaatgcatcctggaacgggccacgcaatctctcctggctcaggtg
gagcagcagagcgaccagctgctggcctccccattggatgaaagggtgcttgccggcatc
gaactgccaacagaggattccaagtatctccccggtgatgaggtgtccagcgttgtcgag
gtgcgcatcgatcgctaccccgtggctcagcatcctgcggccggccacgttgtgcgatct
ctcccgctgaatggcggaccagcagccgaccgggaccttctgctgaccaaagctggtctt
caggaccgtccggtagcacccaggagctctggcaaaacgcctgcgtcaaaaggccgggtc
gatctcaccgcacaacaatcgctgctgcttaagggatggagccaggacgatgcaccgggt
ttgcctgccgtgcacgttgaaaccaaggatggcggttgtcgcctctgggtccatgcgccc
agtgtgggtgagcggatcggtctgggcaacagcctcgatgcctgcctccgcgaccgcggt
gaagccctttgcctcggtgaagtctggcaaccgctgctgactccgtccctccaaaaggcc
accagcttctcggccgggtccgaggctgatgccatcagcgttcggctcgacgtctctgcc
aacggtgaggtgagcgactgggagttcatgctcagcacggtgcgccccgtcgccgaggtg
agcgccgatcagttggtcgccctggcggatcgcaaacccaaggcgcgcagcgtccctacc
gctctcaagccgatcaaagaccagctcggtcagttggagaccctgcgcttctgcagcacg
ctgttgttggagcaggagcgtgccaacgggattgtgcaacttgatctctgccctcctcaa
ctggaggcccttggtgatctgtgcagcgcagatccatccgggttgcggcatcgctgggtt
gatgcgttcaacccggtcgatccccatgcgttccttcagcctctgttgagggccgccgac
cgtgcatggacagcacaacgactcgagctccaattgccgggcatcaccatcgaggcggat
gaacccgatggcagcgtgctcaccgatgtggcgaagacagccatcgccctggatcttccc
cttgaactggatgacgacggctgtccatcagcttcggaactgattcaggtgttcaaagac
agcagtcaacgccgggtgcttgaacaacagctcagtcacgccctgcctcctctcaccctt
gtggcatccacagaggtcccacctgcggcagcagattccgatggggacgaggttgctgcg
tcaagtcagaacacctcactgaccccgtggacctgtgccacccagcactacacccacctg
gtgaatcaacagatgatcgttgcgctgctgacggatgccaaggatcgtccaactgtgcgt
cacaagacgcgcctgaagcttggcctcaagggtgcgggtgctgatctcacatggcccctg
ttcaccgcatcccaggacgagaagttgaacgggttggtgaacgagcgcaccgtgcagcgg
ctcaacacgcgtcggcgtcaggtattggaactggaaaaggatctgctgtcgatgatccaa
gcccgttcagcccaacccctgatcggtgaacaggtggaagggcgcatcagtggtgtgcag
agctatggctttttcgtggaagttggtgaaagtcgcgttgaggggctggtgcatgtgagc
tccctcaacgatgactggtacgaatacagatcacgccagaatcgcttggtcgggcgtaag
aaccgccagacctaccaactcggcgacgccgtgcaggtgcgcgtgatcaatgtggatgtt
ctgcgcaaccagatcgaccttgaggtcatcagccagggtgccaatggctctacggaacct
gaatcctcggagccgctgcccgttgccctcagcgagcgctga
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