Synechococcus sp. WH 8109: Syncc8109_2156
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Entry
Syncc8109_2156 CDS
T03783
Symbol
rpoC1
Name
(GenBank) DNA-directed RNA polymerase
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syh
Synechococcus sp. WH 8109
Pathway
syh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Syncc8109_2156 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syh03021
]
Syncc8109_2156 (rpoC1)
03400 DNA repair and recombination proteins [BR:
syh03400
]
Syncc8109_2156 (rpoC1)
Enzymes [BR:
syh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Syncc8109_2156 (rpoC1)
Transcription machinery [BR:
syh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Syncc8109_2156 (rpoC1)
DNA repair and recombination proteins [BR:
syh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Syncc8109_2156 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
Fas_alpha_ACP
DUF333
DUF7337
Motif
Other DBs
NCBI-ProteinID:
AHF64491
UniProt:
W0H0W5
LinkDB
All DBs
Position
complement(1610784..1612688)
Genome browser
AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKITLASPDRVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKDLKYKQLLTEDEWLEIEDEIYAE
DSEIENEPVVGIGAEALKQLLEDLTLDEVAEQLREEINGSKGQKRAKLIKRLRVIDNFIA
TNARPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQRADDEVM
QVLQEVIDGHPILLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGEPIITPSQDMVLGSYYLTALQPGASKPDFGDRS
CTFAGLEDVIHAFEDNRIGLHDWVWVRFNGEVQDDEELDAPSKSESLSDGTRIEEWSYRR
DRFDEDGALISRYILTTVGRVVMNHTIIDAVAAA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacagcaacctccgcaccgagaaccacttcgattacgtcaagatcaccctcgca
tcacccgatcgggtgatggagtggggacagcgcaccctgccaaacggccaggttgtcggt
gaggtcaccaagccggagaccatcaactaccgcaccctcaagcccgagatggacgggctg
ttctgcgaaaagatctttggcccctctaaagactgggaatgccattgcggcaagtacaaa
cgggtgcgtcaccggggcatcgtttgtgaacgctgtggtgtggaggtcaccgagagccgt
gtgcgtcgtcaccgcatgggcttcatcaagctggcggcccccgtctcccatgtctggtac
ctgaaagggatccccagctatgtggccatcttgctggacatgcccctgcgggatgtcgag
cagatcgtctacttcaactgctacgtggtgctggatcccggcgaccataaggacctgaag
tacaagcagctgctcacggaagacgagtggctggaaattgaagacgagatctatgccgaa
gattccgagatcgagaacgagcccgtggtgggcataggtgctgaggccctcaagcaactg
ctggaagacctcaccctcgatgaagtggctgaacagctgcgggaagagatcaacggcagc
aaaggtcagaagcgcgccaagttgatcaagcgtctgcgcgtgatcgacaacttcatcgcc
accaacgcccgtcccgagtggatggtgctggatgtgatcccggtgattccgcccgatttg
cgtccgatggtgcagctcgacggtggtcgctttgccaccagcgatctcaacgatctctac
cggcgggtgatcaaccgcaacaatcgtctggcgaggctccaggaaatcctggcccctgaa
atcatcgtccgcaacgagaagcggatgctccaggaggccgtcgatgcccttatcgacaac
ggtcgtcgcggtcgcaccgtggtgggtgccaacaatcgtccgctcaagtcactgagcgac
atcattgaaggcaagcagggccgcttccgtcagaacctcctgggtaagcgggtcgactac
tccggtcgttcagtgatcgtggtgggtccgaaactgaagatgcaccagtgcggtctgccc
aaggagatggcgatcgagctgttccagcccttcgtgatccaccgtttgatccgccagaac
atcgttaacaacatcaaggcggccaagaagctgattcagcgggccgacgatgaagtgatg
caggtgctgcaagaggtgatcgacggtcacccgatcctgctgaaccgtgctccaaccctg
caccgtctcggcattcaggccttcgaacccaagctggttgatggccgcgccattcagctg
caccccctcgtctgcccagccttcaacgctgactttgacggtgaccagatggccgtccac
gtgcctctggccatcgaggcgcagaccgaggcccgcatgctgatgctggccagcaacaac
atcctgtcgcctgcgaccggtgagccgatcatcaccccgtcccaggacatggtgcttggt
tcctactacctgacggcgcttcaacccggtgcttccaagcccgacttcggcgatcgcagc
tgcacttttgcgggtctagaggatgtcatccatgccttcgaagacaaccggatcggtctg
cacgactgggtgtgggttcgcttcaacggtgaagttcaggacgatgaagagctggatgcg
cccagcaagagcgaatccctcagcgatggcacgcgtatcgaagagtggagctatcgccgc
gaccgttttgatgaagacggtgccctgatcagtcgctacatcctcaccaccgtgggccgt
gtggtgatgaatcacacgatcatcgacgcggtggccgccgcctga
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