Synechococcus sp. WH 8109: Syncc8109_2488
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Entry
Syncc8109_2488 CDS
T03783
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
syh
Synechococcus sp. WH 8109
Pathway
syh03030
DNA replication
syh03430
Mismatch repair
syh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Syncc8109_2488 (holB)
03430 Mismatch repair
Syncc8109_2488 (holB)
03440 Homologous recombination
Syncc8109_2488 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syh03032
]
Syncc8109_2488 (holB)
03400 DNA repair and recombination proteins [BR:
syh03400
]
Syncc8109_2488 (holB)
Enzymes [BR:
syh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Syncc8109_2488 (holB)
DNA replication proteins [BR:
syh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Syncc8109_2488 (holB)
DNA repair and recombination proteins [BR:
syh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Syncc8109_2488 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
AcnX
Motif
Other DBs
NCBI-ProteinID:
AHF64795
UniProt:
W0GX83
LinkDB
All DBs
Position
complement(1867246..1868178)
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AA seq
310 aa
AA seq
DB search
MFGDLIGQSLAVDLLSAALAQERVAPAYLFAGPEGVGRQLAAVRFLEGLLADGQPSSRER
RRLLERNHPDLLWVEPTYQHQGRLLTRAEAEEAGLSRRTPPQLRLEQIRDIGRCLARQPV
EAKRGMVVIEAAEAMAEAAANALLKTLEEPGHGVLILLTSAPERLLSTIRSRCQLIRFLR
LNPEAMAQVLERTDATSQDSPELLALAAGSPGALIDHRRSLAGLPEQLVQRLDSLPVTPM
DALALARDLCEALDGEQQLWLIGWWQHRLWNSGSSASSLKRLDRLRGQLLSFVQPRLAWE
VALLDLTASV
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgttcggggatctgatcggccagtccctcgccgttgatctgctttcggcggccctagcc
caggaacgcgttgccccggcctacctctttgccggccctgagggggtaggacgtcagttg
gcggcagtgcgttttctggagggactgctggccgatggtcagccctcgtcgcgggaacgt
cgacgcctgctggaacgcaatcaccccgacctgctctgggtggaacccacctatcagcat
cagggccgtttgctgacccgcgccgaagccgaggaggcgggactcagccgccgcactccg
ccccagttgcgcctggagcagatccgcgacatcggacgctgtttggcccgtcagccggtg
gaggcgaagcgcgggatggttgtgattgaggctgctgaggcgatggcggaagctgcggcc
aatgccctgttgaaaacgctggaggaacccggccatggggtgctgattctgttgacgtca
gcccctgagcggttgctcagcacaattcgctcccgctgtcagttgatccgtttccttcgg
ctcaaccccgaggccatggctcaggtgctcgagcgcaccgatgcaacctctcaagattcg
ccggaacttctggccttggctgccgggtctccaggcgccctaatcgaccatcgccgcagc
ctggctggtctgcccgagcagttggttcagcgcctcgattcgcttcccgtcactccaatg
gatgcactggcgttggcacgcgatctctgcgaagccctcgatggcgagcagcagctttgg
ttgattggctggtggcaacaccggctttggaactccggcagttccgcctcaagcctcaag
cgcttggacaggctgcggggccagctgctttcattcgttcagccgcgattagcctgggaa
gtggcgttgctggacctcacggcatctgtctaa
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