Sediminicola sp. YIK13: SB49_00095
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Entry
SB49_00095 CDS
T04145
Name
(GenBank) lytic transglycosylase
KO
K18691
peptidoglycan lytic transglycosylase F [EC:
4.2.2.29
]
Organism
syi
Sediminicola sp. YIK13
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
SB49_00095
Enzymes [BR:
syi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
SB49_00095
Peptidoglycan biosynthesis and degradation proteins [BR:
syi01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
SB49_00095
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Gene cluster
GFIT
Motif
Pfam:
SLT
SBP_bac_3
Lig_chan-Glu_bd
SLT_2
Lysozyme_like
Motif
Other DBs
NCBI-ProteinID:
ALM06394
UniProt:
A0A0S1S0W1
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Position
complement(15512..16951)
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AA seq
479 aa
AA seq
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MRLTSFFFKVPLLVLSLLMFGCGQLKKEEVTREQPIIKRDLAAIKKDGKLKALTVYSGTS
YFLYKGQPMGYEYELLKRFAKHLDLELEMIVVKDLDELITKLNQGEGDILAHGLAITGNR
KESVSFTNYLYLTKQVLVQKKPDNWRTMHWHKLENALIQDAIELLQDTVSIRKGSSYHER
IANLSEELGGKIYIENLSGQMATDEIIKQVAIGNIKYTIADNNIAKIMASYYPILDIEVP
VSFSQRIGWATRQNSPELLKATNLWLEDFRTEVDYNVIYNKYFKNKKNFRRRVKSDIYSL
NREEISPYDELIQEHAEKIDWDWRLIASLIYQESRFDPNNSSWADAKGLMQLMPKTAEEL
GVEDRSDPKQSISGGIRYLNQIWKKFDKIKDSIQRTKFTMASYNCGLYHVKDAQKLATKR
GLDATVWDDNVEDMILALSHPRNYNRPIIKYGYVRGIEPYNYVNQIFERYAHYTQFIKE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcggctgacatctttcttctttaaagtacccttattggtcttatcgctattgatgttt
ggttgcggccagcttaaaaaagaggaggtaacccgtgaacagcctatcataaaacgagat
ttagcagctattaagaaagatggcaaacttaaagccctaaccgtttacagcggaaccagc
tattttctttacaaaggacagcccatgggttatgagtatgagctgctaaaaaggtttgcc
aaacatctggaccttgaacttgaaatgattgttgttaaagatctcgatgagctgattacc
aaactcaatcaaggtgaaggtgatatcttggcacacggacttgccattactggaaaccgc
aaggaatccgtctcgtttaccaattatttgtacttgacaaaacaggtattggtccaaaaa
aagcccgataattggcgtaccatgcattggcataaattagaaaatgccttgattcaggat
gccatagaattgttgcaagataccgtatccatccgcaagggatcctcataccatgagcgc
atagcaaatcttagtgaggaattgggcggtaaaatttatattgaaaacctctcaggacaa
atggccactgatgaaatcattaaacaggttgccatagggaatataaaatatactattgca
gataacaatattgccaaaatcatggcttcctactaccctattttggatattgaggtacct
gttagtttttcgcaacgtattggatgggcaacgcgtcaaaattctcctgaactattaaag
gctacaaacttatggctagaggactttagaacggaggtagattataacgttatttacaac
aaatactttaagaataaaaagaactttagaagacgcgtaaaaagtgatatatacagttta
aaccgtgaagaaatcagcccctacgacgagcttatacaagagcatgctgaaaaaatagat
tgggattggcgcctaattgcttctctgatttatcaagaatccagatttgaccccaataac
agttcatgggccgatgccaaaggattgatgcagttgatgcccaaaactgctgaagaatta
ggggtggaagatcgtagtgatccaaaacaaagtattagtggtggcatcagatacctaaac
cagatttggaaaaaatttgataaaatcaaagactctattcaacgaaccaaattcaccatg
gcctcatacaattgcggattgtaccatgttaaagatgcccaaaagttagctaccaaaaga
ggtctggacgctactgtctgggacgacaatgttgaagacatgatcttagcattgagtcat
ccgagaaactacaacagaccaataataaaatatggttatgtaagaggtatagagccttac
aattacgtgaaccagatttttgagcggtatgcccattacacccaattcataaaggaatag
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