Sediminicola sp. YIK13: SB49_00335
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Entry
SB49_00335 CDS
T04145
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
syi
Sediminicola sp. YIK13
Pathway
syi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SB49_00335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syi03021
]
SB49_00335
Transcription machinery [BR:
syi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SB49_00335
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_r1_2
Sigma70_r4_2
DUF7645
DUF6285
Motif
Other DBs
NCBI-ProteinID:
ALM06430
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All DBs
Position
complement(64204..65067)
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AA seq
287 aa
AA seq
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MRQLKITKQVTNRETASLDKYLQEIGKVDLITADEEVELAQRIKAGDQAALEKLTKANLR
FVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE
QSRIVRLPLNKIGSINKINKTFAFLEQAHERQPSAEEIAKELDMTVEDVKQSLKNSGRHV
SMDAPLIDGEDSNLYDVLRSGESPNPDRELLHESLRTEIERALETLTPREADVIRLYFGL
AGQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYLG
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgagacagcttaagattacaaaacaggttaccaacagggaaaccgcctccttggacaaa
tacttgcaagaaattggcaaagtagaccttattacagcagatgaagaagtagaattggca
caacgtatcaaggccggtgaccaggccgcacttgagaaattgaccaaggcaaaccttcgt
tttgtcgtttctgttgccaagcaatatcaaaaccaaggccttaccctacccgatttgatc
aatgaggggaatttgggattgatcaaggctgcacagcgttttgacgaaacaaggggtttt
aaatttatctcctatgctgtttggtggattcgtcagtccattctacaggcattggcagaa
cagtcgcgtatagtgcgtttgccattgaacaaaattggttctatcaacaagatcaacaaa
acctttgctttcttggagcaggctcacgaaagacagccttctgcagaagagatcgcaaaa
gaattggatatgactgttgaggacgtaaaacaatctttaaagaattctggccgtcacgta
tccatggatgctcctttgattgatggggaagattctaacctttacgatgtattgcgtagt
ggggagtctccaaatcctgacagggaattgttgcatgaatctttgcgtacggaaatagag
cgtgcattggaaaccttaacaccaagggaagcggatgtgatccgtttgtactttggtctt
gcaggacagcattctatgaccttggaagaaattggagagacttttgaccttacaagggaa
cgcgttcgccagatcaaggaaaaggcgatcagaagattaaaacacacttctagaagcaag
attttaaaaacatatttgggctag
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