Sediminicola sp. YIK13: SB49_00340
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Entry
SB49_00340 CDS
T04145
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB49_00340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syi03019
]
SB49_00340
03016 Transfer RNA biogenesis [BR:
syi03016
]
SB49_00340
Enzymes [BR:
syi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SB49_00340
Messenger RNA biogenesis [BR:
syi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SB49_00340
Transfer RNA biogenesis [BR:
syi03016
]
Prokaryotic type
tRNA degradation factors
SB49_00340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ALM06431
LinkDB
All DBs
Position
complement(65255..67477)
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AA seq
740 aa
AA seq
DB search
MIPKVFKEVIDLGDGREISIETGKLAKQAHGSVVVQSGKCMLLCTVVSNYKQSDVDFLPL
TVDYREKFAASGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHAETQVMIQLMS
HDDDVMPEAMAGLAASAAIQLSDFPFECAISEARVGRVNGEFIINPTRAQLKESDIDMMI
GASADSVMMVEGEMKEISEEEMVEAIKFAHDHIKIQCAAQLRLAEAFGKKEVREYDTERE
DEELAQKIHDMAYDKVYAVAKAGSAKHERSASFQEIKEEIKATFSEEEMADFGALVSKYY
SKAEKAAIRDLTLNEGLRLDGRKTDEIRPIWCEVDYLPSTHGSAIFTRGETQALATVTLG
TSREANKIDMPSYEGEETFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRALKGMIPA
DCPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVQLTKPVSGIAMGLISGGDTGKYAV
LSDILGDEDHLGDMDFKVTGTADGITACQMDIKVKGLSYEILVNALKQAQAGRIHILGKL
TETIAAPNEDVKPHSPKMVTRTIPNEFIGALIGPGGKVIQELQKETGCTIVINEDPVTEE
GIVEILGTNQDGIDAVLAKIDSLMFKPAVGSVYEVKVIKMLDFGAVVEYMDAPGNEVLLH
VSELAWERTENVSDVVNMGDVFDVKYFGVDPRTRKDKVSRKALLPKPEGFKERPPREDRG
NDRRGSDRRGSDRDRKPRRD
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaagtttttaaagaggtcattgaccttggggacggtagggaaatttctatc
gaaaccggaaaattggcaaaacaggcccatggttctgttgttgtccagtcaggaaaatgt
atgttattatgtacagttgtttccaactacaaacaaagcgatgttgattttctaccttta
accgtagattatcgtgaaaaattcgcagcttctggtcgttatccaggaggtttcttcaag
agagaagcaagaccaagtgatggagaggtattgaccatgaggttggttgaccgtgttctt
cgtcctttgttcccaaaagattaccacgctgaaacccaggtgatgatccaattaatgtct
catgacgatgacgttatgccagaagcaatggccggtttggcagcttcagcggcaatacaa
ctttcagattttccttttgaatgtgccatctctgaagcaagagtaggtcgtgtaaacgga
gaattcatcatcaaccctacaagggcacagttaaaagaatctgatatcgatatgatgatc
ggagcttctgctgactctgtgatgatggtagaaggtgagatgaaagaaattagtgaagaa
gaaatggtggaagccattaaattcgctcatgaccacatcaaaatacaatgtgctgcccaa
ttgagacttgccgaagcatttggcaagaaagaagtacgtgagtacgataccgaaagggaa
gacgaagaattggctcaaaaaattcatgatatggcctatgataaggtctatgcagtagca
aaagccggatctgccaagcatgaacgtagcgcttcttttcaagagatcaaggaagaaata
aaagccactttttctgaagaggaaatggccgattttggagctttggtttccaaatattat
tcaaaagcagagaaagccgctatccgtgaccttaccttaaatgaaggtcttcgtttggac
ggaagaaagactgacgagatcagacctatctggtgtgaggtagattacctaccttctacc
cacggttctgccatctttacaagaggtgagacccaggctttggccacggtaacgcttggt
acttctagagaagccaacaaaatagatatgccatcttacgaaggtgaggagacattctac
ctacattataatttccctcctttctgtaccggtgaggcaagacctttgcgtggtacttca
agaagagaagtaggacatggtaacttggcccaacgcgctttaaaaggaatgatccctgcg
gattgtccttataccgtacgtgttgtttccgaggtattggaatctaacggttcttcttcc
atggcaacggtttgtgccggaactatggcgttaatggatgccggggtacaattgactaaa
ccagtatctggtattgccatgggattgatttctggtggtgacacaggtaaatatgctgtt
ctctccgatatcttgggtgatgaagatcacttgggggatatggactttaaagtaaccgga
actgcagacgggatcaccgcttgccagatggatattaaagtaaaaggattgtcttacgaa
attcttgtaaatgcattaaagcaggcacaagcaggtcgtatccatatccttggaaagctt
acggaaactattgctgcaccaaacgaagatgtgaaaccacattctccaaaaatggtaacg
cgtactattcctaatgaattcattggtgccttgatcggaccaggtggaaaagtgatccaa
gaacttcaaaaagaaacaggttgtaccattgttatcaatgaagatcctgttaccgaagaa
ggaattgttgaaattttgggaacaaatcaggatggtattgatgctgtattggcaaaaatt
gattccttgatgttcaaaccagctgtaggtagcgtttacgaagtaaaggttattaagatg
ctcgattttggtgctgttgtagaatatatggatgccccagggaacgaagtattgttgcac
gtatcagaattggcttgggaacgcacagaaaatgtatccgatgtggtaaacatgggtgac
gtatttgatgtgaaatattttggagtggatcctaggaccagaaaagataaggtttcccgt
aaggcattattgccaaaaccagaaggtttcaaagaaagaccaccacgtgaagatcgtggg
aacgatagaagaggaagtgaccgacgtggtagcgatagagatcgcaagccaagaagggac
taa
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