Sediminicola sp. YIK13: SB49_00990
Help
Entry
SB49_00990 CDS
T04145
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syi
Sediminicola sp. YIK13
Pathway
syi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SB49_00990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syi03021
]
SB49_00990
03400 DNA repair and recombination proteins [BR:
syi03400
]
SB49_00990
Enzymes [BR:
syi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SB49_00990
Transcription machinery [BR:
syi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SB49_00990
DNA repair and recombination proteins [BR:
syi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SB49_00990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_YknX
BSH_RND_rel
Motif
Other DBs
NCBI-ProteinID:
ALM06541
LinkDB
All DBs
Position
199861..204159
Genome browser
AA seq
1432 aa
AA seq
DB search
MARQKDNNTIKRFDKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYRGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPDGEEIQKMDFLTEEEYLNILESIPVENQY
LEDTDPNKFIAKMGAECLIDILSRIDLDQLSYELRHKANTETSKQRKTEALKRLQVVESL
RDSQKNRQNRPEWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLFECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKEKKTMGDV
IVKGEGITFYSDEEVVIAFNEGRVELNAGIKVRTKDFNEAGELVYQIIPTTVGRVLFNMV
VPEQAGYVNEVLNKKSLRDIIGNILSVTDVPTTADFLDKIKTMGYEFAFKGGLSFSLGDI
IIPPEKHEMIADANEQVDGIMANYNMGLITNNERYNQVIDVWTSTNAMLTELAMKRIRED
KQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGIEVEALKKNE
EIVESLGERILGRVALHDVINPLTEEILLRAGQEILEADVKRIEASPIDKVEVRSALTCE
AQKGICGKCYGRNLSTNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDSK
LEARFGGIAEIEDLRTVTGTDGEGKAVETVISRTSEIKVVDAKTGITLSTNNIPYGSQLF
IKNGAKVEKGELICQWDPYNGVIVSEFPGKIAYENIDQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLLIKNNNDEVLRSYNLPVGSHIMVDNGDKISEGKILVKIPRKSAKSGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGEIKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLAHKDDFILENDEIFGKKVVLDDGDSENLKPGQIITAREL
RDENSLLRRGDKNLVTARDAVAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDTLEGLKENVIVGHKIPAGTGMRDYDNIIVGSKEEFDEIMARKEEFKF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggctagacaaaaagataataacacaataaaaaggttcgataaaatttcaatcggattg
gcatctccagaatctattttggcggagtcaagaggggaagttttgaagcctgaaactatt
aactatagaacgcacaaacccgagcgtgacggtcttttttgtgagcgtatttttggtcct
gtaaaggattacgaatgtgcttgtggaaaatataagagaattcgttaccgtggtattgtt
tgtgaccgttgtggggtagaggttacagaaaagaaagtacgtagggacagagtagggcac
atcaacttggtggttcccgttgctcacatctggtacttccgttctttgccgaataaaata
ggataccttctaggattaccttccaagaaattggacatgatcatctattatgagcgttat
gtggttatccaaccaggtattgcaaagggtcctgatggggaagagattcagaaaatggat
ttcttgaccgaagaggagtatctgaacatcttggaatccattccggtggagaaccaatac
ttggaagatacagatccaaacaagtttattgctaaaatgggagctgaatgtttgatcgat
atcttatctagaatcgatttggaccaactttcctatgaactaaggcataaggcaaataca
gaaacttccaagcagcgtaagacagaagctcttaagcgtttgcaggtggttgagtctttg
cgtgattcgcagaagaacaggcagaatagacctgagtggatgattatgaaagtaatccct
gtaattccaccagaacttagaccattggttccattggatgggggtcgttttgcgacgtcc
gatttgaatgacctttacagaagggtaatcatcagaaacaaccgtttgaaaagattggtt
gagatcaaagctcctgaagtaatcttaaggaacgagaagcgtatgcttcaagaatcagtg
gattccttgttcgataacacccgtaaggcatcagccgttaaaacggaatcgaacagacca
ttgaaatctctttctgattccttgaaaggtaagcaaggtcgtttccgtcaaaaccttttg
ggtaaacgtgtggattattccgctcgttcggtaatcgttgttggacctgaaatgaaattg
ttcgaatgtggtctaccaaaagatatggccgcagaactttacaagccgttcgttattcgt
aagttgatcgaaagaggtattgtaaaaactgttaaatcagcgaagaaaattatagataag
aaggaaccagtagtttgggacattcttgaaaacgtattaaaaggacatcctgtactattg
aacagggcccctacattgcaccgtttaggtatacaagcgttccagccaaaacttattgaa
ggaaaggctatccgtttacacccattggtatgtacggcatttaacgcggatttcgatggg
gatcaaatggcagtacatttgcctttgggaccagaagctattttggaagcacaattatta
atgttggcttcccacaacatattgaacccagcaaacggttcacctatcacagtaccatca
caggatatggtcttgggtctttactatatgaccaaagagaaaaaaaccatgggcgatgtt
atcgttaaaggtgagggtattacgttctattccgatgaggaagtggttatcgctttcaac
gaaggtagggtagaacttaatgcaggtatcaaggtaagaacgaaagattttaatgaagcg
ggagaacttgtttaccaaattataccaacaactgtaggtagggtattgttcaacatggta
gtgccagaacaggcaggttatgtgaacgaagtattgaacaaaaaatcattgcgtgatatt
attggtaacatattaagtgtgaccgatgtacctaccacggctgatttcttggataagatt
aagaccatggggtatgaattcgcttttaaaggtggattgtcctttagtcttggtgatatt
attatcccaccagagaagcatgaaatgattgccgatgccaacgaacaagtggatggtatt
atggcaaactataacatgggtcttattaccaataacgaacgttacaatcaggtgattgat
gtttggacctctacgaatgcgatgttgaccgaattggcaatgaagcgtatccgtgaagac
aaacaaggatttaactctgtgtacatgatgttggattctggagcaaggggttccaaggaa
cagattcgtcagttgaccggtatgcgtggattgatggccaagcctaaaaaatctaccgct
ggtggtggtgaaattattgaaaacccgatcctttccaactttaaggaaggtctttccatc
ttggagtactttatttctacccacggtgcgcgtaaaggtcttgcggatactgcattgaaa
actgcggatgcaggatacctaacccgtcgtttggtggatgtatcacaggatgtgatcatc
aacactgaagattgtggaacgttacgtggaattgaggttgaggccttgaagaaaaacgaa
gaaatcgttgaaagtctaggagaaagaatcttaggtagggttgccttgcacgatgtgatc
aatcctttgacagaagaaattttgttaagagcaggacaagagatattggaggcagacgtg
aaaagaatcgaagcttctcctatagataaggtagaagtgagatcagcattgacctgtgag
gcccaaaaaggtatctgtggtaaatgttacggtagaaacctatctaccaataaaatggta
caaagaggtgaagctgttggtgttgttgctgcccaatccattggagagcctggaacacag
ttgactttgcgtactttccacgtgggaggtattgcaggtaacatttctgaagacagtaaa
ttagaagctagattcggtggtatagccgagatcgaagatctaagaacggtaacaggaact
gacggtgaaggaaaagcagtggaaactgtaatatccagaacatcggagataaaagttgta
gatgccaaaacaggaatcacactaagtaccaataacattccttacggatctcaattgttc
atcaagaacggtgctaaggttgagaaaggagagcttatttgtcagtgggatccatataac
ggtgtaattgtttctgaattcccaggtaagattgcttatgaaaatattgatcaaggtatt
acataccaagttgaaatagatgagcaaactggattccaggaaaaagtaatctctgaatct
agaaacaagaaattgataccaacattattgattaaaaacaataatgatgaggtattgcgt
tcttataacctaccggttggatcacacattatggtggacaacggtgataagatcagtgaa
ggtaaaatcttggtgaaaattccacgtaaatctgctaagtcaggggatattacaggtggt
cttccaagagtaaccgaattgttcgaagcacgtaacccatctaacccagcggtagtttct
gaaattgatggtgttgtttctttcggtaaaattaaaagaggtaaccgtgagattatcata
gaatcaaaattgggagagatcaagaaatacttggtaaaactgtccaaccagattctggta
caagagaacgattatgtacgtgcaggaatgccgttatcagacggttctattactccagag
gatatcttggcaattaaaggaccatctgctgtacaacagtacttagtgaatgaggtacaa
gaagtatatcgtctacaaggggtgaagatcaacgacaagcattttgaggttgttgttcgt
caaatgatgcgtaaagtacgtattcaggatccgggtgataccatattcttggagaaccaa
ttggctcataaagacgatttcattttagaaaatgatgaaattttcggtaagaaagtagtt
ttggatgatggagattctgaaaacttgaaaccaggtcagatcattactgctcgtgagcta
agggatgaaaactcacttcttagaagaggggacaagaacttggtaacggccagagacgcg
gttgcggctacggctacaccaatcttacaaggtattacaagagcctcgttacagactaaa
tcattcatatcggctgcttccttccaggaaacaactaaggtattgaacgaagcggctgta
gcaggtaaagttgatacattggaaggcttgaaagaaaatgtaattgtaggacataagatt
ccggcaggtacaggtatgagggattatgataacatcatcgtgggttctaaagaagaattc
gatgagatcatggcccgtaaggaagagttcaagttttaa
DBGET
integrated database retrieval system
